get_rmdl {recountmethylation} | R Documentation

## Get DNAm assay data.

### Description

Uses RCurl to recursively download latest H5SE and HDF5 data objects from the server. This is currently wrapped in the getdb() functions.

### Usage

    get_rmdl(
      which.class = c("rg", "gm", "gr", "test"),
      which.type = c("h5se", "h5"),
      fn = NULL,
      dfp = "downloads",
      url = "https://recount.bio/data/",
      show.files = FALSE,
      download = TRUE,
      verbose = TRUE,
      sslver = FALSE
    )

### Arguments

`which.class` | Either "rg", "gm", "gr", or "test" for RGChannelSet, MethylSet, GenomicRatioSet, or 2-sample subset (default "test").
`which.type` | Either "h5se" for an HDF5-SummarizedExperiment (default) or "h5" for an HDF5 database.
`fn` | Name of file on server to download (optional, default NULL).
`dfp` | Download destination directory (default "downloads").
`url` | The server URL to locate files for download.
`show.files` | Whether to print server file data to console (default FALSE).
`download` | Whether to download (TRUE) or return queried filename (FALSE).
`verbose` | Whether to return verbose messages.
`sslver` | Whether to use server certificate check (default FALSE).

### Value

New filepath to dir with downloaded data.

### See Also

servermatrix(), getURL(), loadHDF5SummarizedExperiment(), h5ls()

[Package recountmethylation version 1.0.0 Index]