getMedSenLineActivity {rcellminer} | R Documentation

## Returns a vector of median sensitive cell line activity (-logGI50) values for a set of compounds.

### Description

Returns a vector of median sensitive cell line activity (-logGI50) values for a set of compounds.

### Usage

    getMedSenLineActivity(
      idSet,
      senLineActZThreshold = 0.5,
      onlyCellMinerExps = TRUE,
      dataSource = "NCI60"
    )

### Arguments

`idSet` | a character vector specifying identifier(s) for compound(s) of interest.
`senLineActZThreshold` | the minimum activity z-score for a sensitive cell line (default=0.5).
`onlyCellMinerExps` | a logical value indicating whether to base results strictly on experimental data included in CellMiner (default=TRUE).
`dataSource` | character string indicating data source (default="NCI60"). Currently only "NCI60" is supported.

### Value

a numeric vector of median sensitive cell line activity (-logGI50) values indexed by the identifiers in idSet.

### Examples

    idSet <- c("609699", "740")
    getMedSenLineActivity(idSet)

[Package rcellminer version 2.12.1 Index]