findPathwaysByLiterature {rWikiPathways} | R Documentation

## Find Pathways By Literature

### Description

Retrieve pathways containing the query citation.

### Usage

    findPathwaysByLiterature(query)

### Arguments

`query` | The `character` string to search for, e.g., a PMID, title keyword or author name.

### Details

The score is from a lucene index search engine, ranging from 0 to 1 with higher scores for better matches. The two literature columns are lists of pubmed ids and titles for the citations matching the query per pathway. The graphId column lists the id for any objects in the GPML pathway model that have been spcifically annotated with the matching citations.

### Value

A `dataframe` of pathway attributes in addition to query result score and literature details

### Examples

    {
    findPathwaysByLiterature('19649250')
    findPathwaysByLiterature('smith')
    findPathwaysByLiterature('cancer')
    }

[Package rWikiPathways version 1.10.2 Index]