run_all {qckitfastq} | R Documentation

## Will run all functions in the qckitfastq suite and save the data frames and plots to a user-provided directory. Plot names are supplied by default.

### Description

Will run all functions in the qckitfastq suite and save the data frames and plots to a user-provided directory. Plot names are supplied by default.

### Usage

    run_all(infile, dir)

### Arguments

`infile` | Path to gzipped FASTQ file
`dir` | Directory to save results to

### Value

Generate files from all functions

### Examples

    infile <- system.file("extdata", "test.fq.gz",
        package = "qckitfastq")
    testfolder <- tempdir()
    run_all(infile, testfolder)

[Package qckitfastq version 1.6.0 Index]