calc_adapter_content {qckitfastq} | R Documentation

## Compute adapter content in reads. This function is only available for macOS/Linux.

### Description

Compute adapter content in reads. This function is only available for macOS/Linux.

### Usage

    calc_adapter_content(infile, adapters)

### Arguments

`infile` | filepath to fastq sequence
`adapters` | filepath to adapters

### Value

map object with adapter names as the key and the number of times the adapters appears in the reads as the value

### Examples

    if(.Platform$OS.type != "windows") {
    adapter_file <- system.file("extdata", "adapters.txt", package = "qckitfastq")
    infile <- system.file("extdata", "test.fq.gz", package = "qckitfastq")
    content <- calc_adapter_content(infile, adapter_file)
    }

[Package qckitfastq version 1.6.0 Index]