read_content {qckitfastq} | R Documentation

## Compute nucleotide content per position. Wrapper function around seqTools.

### Description

Compute nucleotide content per position. Wrapper function around seqTools.

### Usage

    read_content(fseq, output_file = NA)

### Arguments

`fseq` | a seqTools::fastqq object
`output_file` | File to write results in CSV format to. Will not write to file if NA. Default NA.

### Value

Data frame of nucleotide sequence content per position

### Examples

    infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
    fseq <- seqTools::fastqq(infile,k=6)
    read_content(fseq)

[Package qckitfastq version 1.6.0 Index]