plot_per_base_quality {qckitfastq} | R Documentation

## Generate a boxplot of the per position quality score.

### Description

Generate a boxplot of the per position quality score.

### Usage

    plot_per_base_quality(per_base_quality, output_file = NA)

### Arguments

`per_base_quality` | a data frame of the mean, median and quantiles of sequence quality per base. Most likely generated with the 'per_base_quality' function.
`output_file` | File to save plot to. Will not write to file if NA. Default NA.

### Value

A boxplot of per position quality score distribution.

### Examples

    pbq <- per_base_quality(system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq"))
    plot_per_base_quality(pbq)

[Package qckitfastq version 1.6.0 Index]