overrep_reads {qckitfastq} | R Documentation

## Sort all sequences per read by count.

### Description

Sort all sequences per read by count.

### Usage

    overrep_reads(infile, output_file = NA)

### Arguments

`infile` | Path to gzippped FASTQ file.
`output_file` | File to save data frame to. Default NA.

### Value

Table of sequences sorted by count.

### Examples

    infile <- system.file("extdata", "10^5_reads_test.fq.gz",
        package = "qckitfastq")
    overrep_reads(infile)[1:5,]

[Package qckitfastq version 1.6.0 Index]