Package: pulsedSilac
Type: Package
Title: Analysis of pulsed-SILAC quantitative proteomics data
Version: 1.4.0
Author: Marc Pagès-Gallego, Tobias B. Dansen
Maintainer: Marc Pagès-Gallego <M.PagesGallego@umcutrecht.nl>
Description: This package provides several tools for pulsed-SILAC data analysis.
    Functions are provided to organize the data, calculate isotope ratios, 
    isotope fractions, model protein turnover, compare turnover models, estimate 
    cell growth and estimate isotope recycling. Several visualization tools are
    also included to do basic data exploration, quality control, condition 
    comparison, individual model inspection and model comparison.
License: GPL-3
Encoding: UTF-8
LazyData: false
Depends: R (>= 3.6.0)
biocViews: Proteomics
Suggests: testthat (>= 2.1.0), knitr, rmarkdown, gridExtra
Imports: robustbase, methods, R.utils, taRifx, S4Vectors,
        SummarizedExperiment, ggplot2, ggridges, stats, utils, UpSetR,
        cowplot, grid, MuMIn
RoxygenNote: 7.0.2
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/pulsedSilac
git_branch: RELEASE_3_12
git_last_commit: 9ca6c3b
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 03:43:05 UTC; biocbuild
Built: R 4.0.3; ; 2020-10-28 15:00:01 UTC; windows
