geneAttrPlot {psygenet2r} | R Documentation

## Ploting the relation between genes and disease-categories

### Description

Given a set of genes or a result of `psygenetGene` creates four types of plots showing the relation of the genes with the disease's category in psyGeNET.

### Usage

    geneAttrPlot(x, type = "pie", ..., verbose = FALSE)

### Arguments

`x` | Vector of genes of interest of `DataGeNET.Psy` resulting of `psyegnetDisease`.
`type` | Type of the drawn chart. By default it is `"pie"`. It can takes `"pie"` to plot a pie chart with the number of genes for each psychiatric category, `"disease category"` for visualizing a barplot with the total and specific number of genes for each psychiatric disorder, `"evidence index"` for a barplot showing for each psychiatric disorder the number of gene-disease associations according to the Evidence index and `"gene"` for visualizing a barplot with the total and specific number of diseases associated to each gene.
`...` | (Check NOTE section) Passed to inner functions for different plots.
`verbose` | By default `FALSE`. Change it to `TRUE` to get a on-time log from the function.

### Value

A plot for a `DataGeNET.Psy` in terms of the panther-class.

### Note

The "Evidence Index" is gotten from PsyGeNET. For more information about it and its calculation, pease visit `psygenet.org`. Argument `...` can be filled with specific argument depending on the type of plot:

Type | Argument | Color | Description
gene | cuiBarColor | Purple | Determines the color of the bar for diseases
| diseaseCategoryBarColor | Yellow | Determines the color of the bar for psychiatric categories
disease category | uniqueGenesBarColor | Orange | Determines the color of the bar for unique genes for a disease category
| totalGenesBarColor | Blue | Determines the color of the bar for total genes for a disease category

[Package psygenet2r version 1.22.5 Index]