pantherGraphic {psygenet2r} | R Documentation

## Query PsyGeNET for given genes and creates a representation in base of their panther-class

### Description

Given a vector of genes of interest (or using a DataGeNET.Psy object), this function creates a representation of a the panther-class these genes belongs to.

### Usage

    pantherGraphic(x, database = "ALL", evidenceIndex, verbose = FALSE)

### Arguments

`x` | Vector of genes of interest of `DataGeNET.Psy` resulting of `psyegnetDisease`.
`database` | Name of the database that will be queried. It can take the values `'psycur15'` to use data validated by experts for first release of PsyGeNET; `'psycur16'` to use data validated by experts for second release of PsyGeNET; or `'ALL'` to use both databases. Default `'ALL'`.
`evidenceIndex` | threshold to take into account a gene in the analysis
`verbose` | By default `FALSE`. Change it to `TRUE` to get a on-time log from the function.

### Value

A plot for a `DataGeNET.Psy` in terms of the panther-class.

### Examples

    d.alch <- pantherGraphic( c( "COMT", "CLOCK", "DRD3" ), "ALL" )

[Package psygenet2r version 1.22.5 Index]