prepareJunctionQuantSTAR {psichomics} | R Documentation

## Prepare user-provided files to be loaded into psichomics

### Description

Prepare user-provided files to be loaded into psichomics

### Usage

    prepareJunctionQuantSTAR(..., startOffset = -1, endOffset = +1)

    prepareGeneQuantSTAR(
      ...,
      strandedness = c("unstranded", "stranded", "stranded (reverse)")
    )

### Arguments

`...` | Character: path of (optionally named) input files (see Examples)
`startOffset` | Numeric: value to offset start position
`endOffset` | Numeric: value to offset end position
`strandedness` | Character: strandedness of RNA-seq protocol; may be one of the following: `unstraded`, `stranded` or `stranded (reverse)`

### Value

Prepared file (if `output != NULL`) and object

### Examples

    ## Not run:
    prepareJunctionQuant("Control rep1"=junctionFile1,
                         "Control rep2"=junctionFile2,
                         "KD rep1"=junctionFile3,
                         "KD rep2"=junctionFile4)

    ## End(Not run)
    ## Not run:
    prepareGeneQuant("Control rep1"=geneCountFile1,
                     "Control rep2"=geneCountFile2,
                     "KD rep1"=geneCountFile3,
                     "KD rep2"=geneCountFile4)

    ## End(Not run)

[Package psichomics version 1.16.0 Index]