queryEnsemblByGene {psichomics} | R Documentation

## Query information from Ensembl

### Description

Query information from Ensembl

### Usage

    queryEnsemblByGene(gene, species = NULL, assembly = NULL)

    queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)

### Arguments

`gene` | Character: gene
`species` | Character: species (may be `NULL` for an Ensembl identifier)
`assembly` | Character: assembly version (may be NULL for an Ensembl identifier)
`event` | Character: alternative splicing event
`data` | Matrix or data frame: alternative splicing information

### Value

Information from Ensembl

### See Also

Other functions to retrieve external information: `ensemblToUniprot()`, `plotProtein()`, `plotTranscripts()`

### Examples

    queryEnsemblByGene("BRCA1", "human", "hg19")
    queryEnsemblByGene("ENSG00000139618")
    event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
    queryEnsemblByEvent(event, species="human", assembly="hg19")

[Package psichomics version 1.16.0 Index]