calculateInclusionLevels {psichomics} | R Documentation

## Calculate inclusion levels using alternative splicing event annotation and junction quantification for many samples

### Description

Calculate inclusion levels using alternative splicing event annotation and junction quantification for many samples

### Usage

    calculateInclusionLevels(
      eventType,
      junctionQuant,
      annotation,
      minReads = 10,
      onlyReturnASeventNames = FALSE
    )

### Arguments

`eventType` | Character: type of the alternative event to calculate
`junctionQuant` | Matrix: junction quantification with samples as columns and junctions as rows
`annotation` | Data.frame: alternative splicing annotation related to event type
`minReads` | Integer: minimum of total reads required to consider the quantification as valid

### Value

Matrix with inclusion levels

[Package psichomics version 1.16.0 Index]