432e2461a99dbca86c3d55f452b062d3 *CITATION
775ca8c7c9ecf0249cefffb298e5f82f *DESCRIPTION
ffc23fde13b0acef37ffc653d17b91b0 *INDEX
2710d86b7a52bca8d4b9030baf31ab87 *LICENSE
f15d7cf9a95f09bd7817f84336866664 *Meta/Rd.rds
fc62ea8a2dccf7b59244ef6618ff9bd6 *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
09d28cae59ae7d8f953b4574296fc1d8 *Meta/hsearch.rds
219764a3bf1a07ef9c6229080531c23f *Meta/links.rds
466bb291873be0547ad190d546ec08a5 *Meta/nsInfo.rds
ad3f7380e2aeb189c1f8cc393b5701e1 *Meta/package.rds
38763e282dbf79189cd537de3b3c5e3c *Meta/vignette.rds
7713f779f3051a37887359c4f43d56b0 *NAMESPACE
a8aea8738f4f0cf2ed72e6ba69b7f658 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/proActiv
116e5573be8ee44a2c52c84d5e179e36 *R/proActiv.rdb
01aedbe61cbda4f3a481212e0c99ed92 *R/proActiv.rdx
403570adbdbec03b16c2ba0db42cad6a *data/Rdata.rdb
7f44dd4c52d70b5f1580b7ec14305b22 *data/Rdata.rds
4d61d14287eef2fbe987dab8702acabd *data/Rdata.rdx
6349eb33c165e96f6dd65ab9f2f8e64f *doc/index.html
fe153976cc241ca8bfd5aad1d9326592 *doc/proActiv.R
a055aa4f584423c9b14c902012113754 *doc/proActiv.Rmd
dd36f1beb63e328b6b401bfd78c4412b *doc/proActiv.html
b9307cda10701ec17b5eda6b6bf4e037 *extdata/testdata/bam/SGNEx_A549_Illumina_replicate1-run1_genome_subset.bam
0df3f91a3764a0ffa2b5062bd61e1ffb *extdata/testdata/bam/SGNEx_MCF7_Illumina_replicate2-run1_genome_subset.bam
3967a2af9e2cf814fc8402f383b86b89 *extdata/vignette/annotations/exonsBy.rap1gap.rds
972901ded79d9e3e91f462de3bbbbc25 *extdata/vignette/annotations/gencode.v34.annotation.rap1gap.sqlite
af5befa188b47088af2d7498769882ff *extdata/vignette/annotations/gencode.v34.annotation.subset.gtf.gz
7c37b3ccf26021d93238624da184620b *extdata/vignette/annotations/gencode.v34.annotation.subset.sqlite
2dfff9f9f859e781168e39f33322d402 *extdata/vignette/junctions/SGNEx_A549_Illumina_replicate1-run1.subset.SJ.out.tab.gz
f38044d918431184c68ee8de6324ad90 *extdata/vignette/junctions/SGNEx_A549_Illumina_replicate3-run1.subset.SJ.out.tab.gz
bf7fedbdf3a0170e1e3e09abd5326673 *extdata/vignette/junctions/SGNEx_A549_Illumina_replicate5-run1.subset.SJ.out.tab.gz
919414dcaefcbdf133f9bd0a7b2e82fe *extdata/vignette/junctions/SGNEx_HepG2_Illumina_replicate2-run1.subset.SJ.out.tab.gz
ffb766828b1c483f9fa353b5d81f36da *extdata/vignette/junctions/SGNEx_HepG2_Illumina_replicate4-run1.subset.SJ.out.tab.gz
3fde426e9046a51c49dfb7c3e18f3373 *extdata/vignette/junctions/SGNEx_HepG2_Illumina_replicate5-run1.subset.SJ.out.tab.gz
326a0c3cfd421d1a6eb5673c7818750e *help/AnIndex
e7e5a52db04e0839d7a5a41ea86ab459 *help/aliases.rds
a8dff878cc99dffea5e2b8c1fdebd75d *help/figures/proActiv_design.png
66a9381b81d93f99505f446d1093e55e *help/figures/proActiv_logoName.png
962a94d902c38114f8b0e474ccb575a4 *help/figures/proActiv_name.png
9a9e40cc6d5b19c43f8505375e98ad15 *help/paths.rds
807f784e204629ca7284ccfd0367ea7a *help/proActiv.rdb
ebf9d02ca37d3a33ef60d5e3adfb2894 *help/proActiv.rdx
7347a089669b0c65d86bd98fcab02918 *html/00Index.html
068a215fcf52f3ca95e06f7d4cded866 *html/PromoterAnnotation-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
0c1e6618348b41d9615745375b6a0052 *html/calculateJunctionReadCounts.html
252a25aeed70eabb1a199ccf89663b74 *html/calculatePromoterReadCounts.html
e420c8e43b6027f333bb2420f3704b96 *html/getAbsolutePromoterActivity.html
742c4a94aacbabd5819cdbcb6ff15643 *html/getGeneExpression.html
6f2d893871fdd51abceb2d2b34e4be07 *html/getRelativePromoterActivity.html
6238166733c15a272cd8962423c08717 *html/normalizePromoterReadCounts.html
111dd914a15920bfdafd201e18949bd3 *html/plotPromoters.html
d94a755952cd4e12fc8d1bb616df3dbb *html/preparePromoterAnnotation.html
2332f02066d2e147c11d97f77d0e61b0 *html/proActiv.html
9668c85167c31982b074b997d6b2d85e *html/promoterAnnotation.gencode.v34.subset.html
b9685c7ee3ba9bb504f16b57e5d2e58a *html/reexports.html
