b978dd7ef8617b51972cd47006cebd2c *CITATION
d1eb8c93a6ad6565c44934a0923959f1 *DESCRIPTION
81c66aa8111d8ab9c1426ed9961f3e3b *INDEX
6986b23104b5b70f73f022ddbdef837b *Meta/Rd.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
b4b803eb32fe488049a7a933a37e76e8 *Meta/hsearch.rds
836d8eb800309a2397f61782fb92ca06 *Meta/links.rds
6715d364de4230a8a1f482188110000f *Meta/nsInfo.rds
0307c097f5e06822885056f2f3df7ec5 *Meta/package.rds
fd2534700600c4f15d3a38d7b9e8eb60 *Meta/vignette.rds
ee5e13c6344dd81e1ae6ae2e5c21aaa8 *NAMESPACE
3fdcdc83f41a05d57b850231e2e1ab49 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/pram
d7a0e324c6ceed8a53572f3fefc4c202 *R/pram.rdb
a522f800558663f1f6c4bd4c39ffea5c *R/pram.rdx
9e58ad003138d1c66a70d0d10db3d418 *doc/index.html
824b85569f10f7b0abc4c47926d0b13a *doc/pram.R
a4e2076d4e1656856bc8f3c1da25efc5 *doc/pram.Rmd
efb10bb6c00cdcd385360ea10c29cb11 *doc/pram.pdf
6bc8dfb54b9e62665f41741b2609367c *extdata/bam/CMPRep1.sortedByCoord.clean.bam
3c00bc5d9e5b4e0f16b1f0a1821d63d7 *extdata/bam/CMPRep1.sortedByCoord.clean.chr10.plus.bam
cd18f07d323eec235e4f443244268ec9 *extdata/bam/CMPRep1.sortedByCoord.clean.chr12.minus.bam
ddf08b29acc438c11554daf480bf1699 *extdata/bam/CMPRep1.sortedByCoord.raw.bam
aca49d6b6a2ffd81f81b2f56d0b40e02 *extdata/bam/CMPRep2.sortedByCoord.clean.bam
ab783a9429dbd68054ab1e202589d6f6 *extdata/bam/CMPRep2.sortedByCoord.raw.bam
c72525196731ba5c7a453634e02c245e *extdata/benchmark/plcf.tsv
0dc29665caca31ba0542276d3b7609c0 *extdata/benchmark/tgt.tsv
312a28fd4191383057964266227d6622 *extdata/chromsize/hg19.tsv.gz
0ec9c7b98e125033f6b712211c82e71e *extdata/chromsize/hg38.tsv.gz
7a546ec366f0387ef4d6da49fec1b6d1 *extdata/chromsize/mm10.tsv.gz
bcfe201a8da1b4b4dd7e69d6962d82fc *extdata/chromsize/mm9.tsv.gz
c91b4bd76f65ff4982a7c32187a194de *extdata/demo/SZP.bam
2bff64cd1a98e2a008a3a05aa3fa54e0 *extdata/demo/TLC.bam
c8ff38a72ebd56b20e9b954a12f6800e *extdata/demo/in.gtf
88418451ac78fa3dd45bf4bd49a8f5e5 *extdata/gtf/defIgRanges_in.gtf
162b125396864c90049ee15a5fca22a6 *extdata/gtf/gnc_v24_minus_chr18.gtf
a7cc0cbac78919adb1e6fcb74f8e6ee1 *extdata/gtf/ig_mm10_chr12.gtf
a3b6aa1d02a8bb0f7997d6607c45caf3 *extdata/gtf/selModel_in.gtf
0624089e8191beec85a3ce578e059b08 *extdata/gtf/selModel_out.gtf
e88e53a580084e44f21144a99e466015 *extdata/vignettes/pram.pdf
b97f7004555545b4e69a075419d407b2 *help/AnIndex
417b64a7b95699f8f78d34657094c5ed *help/aliases.rds
7b47b1d33b34ab1fc4fa8c5d825802c7 *help/paths.rds
20185bbb125e1b3a9d1f2a3ba6d07d12 *help/pram.rdb
69bb34a0874ac3c4be86bf2c7da4f8ec *help/pram.rdx
333bc4453e16fb1215c65237affe3644 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
1fd33f318bac3ee8c7c5e22b76a6f28a *html/buildModel.html
3fc4a00ffa5758548b89c1796ab798ce *html/defIgRanges.html
059c9b163759073f1508d32f60e3f68d *html/evalModel.html
10004a46ca694c97fc748bdd238c152a *html/prepIgBam.html
b069869496e88c66dc60a5db84525e21 *html/runPRAM.html
76ed4a1dcac38c206ab691913b833a68 *html/selModel.html
