taxa_are_rows<- {phyloseq} | R Documentation

## Manually change taxa_are_rows through assignment.

### Description

The taxa_are_rows slot is a logical indicating the orientation of the abundance table contained in object `x`.

### Usage

    taxa_are_rows(x) <- value

    ## S4 replacement method for signature 'otu_table,logical'
    taxa_are_rows(x) <- value

    ## S4 replacement method for signature 'phyloseq,logical'
    taxa_are_rows(x) <- value

### Arguments

`x` | `otu_table-class` or `phyloseq-class`
`value` | A logical of length equal to 1. If `length(value) > 1`, the additional elements will be ignored. Only the first element is assigned to the taxa_are_rows slot.

### Examples

     data(esophagus)
     taxa_are_rows(esophagus)
     taxa_are_rows(otu_table(esophagus))

[Package phyloseq version 1.34.0 Index]