Package: philr
Type: Package
Title: Phylogenetic partitioning based ILR transform for metagenomics
        data
Version: 1.16.0
Date: 2017-04-07
Authors@R: c(person("Justin", "Silverman", role=c("aut", "cre"),
                     email = "jsilve24@gmail.com"))
Author: Justin Silverman
Maintainer: Justin Silverman <jsilve24@gmail.com>
Description: PhILR is short for Phylogenetic Isometric Log-Ratio Transform.
 This package provides functions for the analysis of compositional
 data (e.g., data representing proportions of different variables/parts).
 Specifically this package allows analysis of compositional data where the parts
 can be related through a phylogenetic tree  (as is common in microbiota survey
 data) and makes available the Isometric Log Ratio transform built from the
 phylogenetic tree and utilizing a weighted reference measure.
License: GPL-3
LazyData: TRUE
RoxygenNote: 6.1.1
Imports: ape, phangorn, tidyr, ggplot2, ggtree
Depends:
Suggests: testthat, knitr, rmarkdown, BiocStyle, phyloseq, glmnet,
        dplyr
VignetteBuilder: knitr
biocViews: ImmunoOncology, Sequencing, Microbiome, Metagenomics,
        Software
URL: https://github.com/jsilve24/philr
BugReports: https://github.com/jsilve24/philr/issues
git_url: https://git.bioconductor.org/packages/philr
git_branch: RELEASE_3_12
git_last_commit: 686f4ac
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 03:30:17 UTC; biocbuild
Built: R 4.0.3; ; 2020-10-28 14:55:35 UTC; windows
