adjustDataset {phantasus} | R Documentation

## Adjust dataset

### Description

Adjust dataset

### Usage

    adjustDataset(
      es,
      scaleColumnSum = NULL,
      log2 = FALSE,
      onePlusLog2 = FALSE,
      inverseLog2 = FALSE,
      quantileNormalize = FALSE,
      zScore = FALSE,
      robustZScore = FALSE,
      sweep = NULL
    )

### Arguments

`es` | Expression set to perform adjustment on
`scaleColumnSum` | perform sum scaling of columns (default FALSE)
`log2` | perform logarithm2 adjustment (default FALSE)
`onePlusLog2` | perform log2(1+x) adjustment (default FALSE)
`inverseLog2` | perform 2^x adjustment (default FALSE)
`quantileNormalize` | perform quantile normalization (default FALSE)
`zScore` | perform zScore adjustment: subtract mean, divide by std (default FALSE)
`robustZScore` | perform robustZScore adjustment: subtract median, divide by MAD (default FALSE)
`sweep` | perform sweep adjustment on rows/columns (default FALSE)

### Value

Nothing. Adjusted dataset will be assigned as ES in global environment

### Examples

    ## Not run:
    es <- gseGSE('GSE53986')[[1]]
    adjustDataset(es, log2 = T, quantileNormalize = T)

    ## End(Not run)

[Package phantasus version 1.10.0 Index]