LUAD_subset {padma} | R Documentation

## Subset of batch-corrected multi-omic TCGA data in lung adenocarcinoma

### Description

List of multi-omic (RNA-seq, copy number alterations, methylation, and miRNA-seq) and phenotypic data in 144 individuals in the TCGA-LUAD data for the 13 genes in the D4-GDI signaling pathway.

### Usage

    data(LUAD_subset)

### Format

A named list of five objects of class `data.frame` containing a subset of the batch-corrected multi-omic TCGA data from lung adenocarcinoma, corresponding to the 13 genes in the D4 GDI signaling pathway: `'clinical'` is of dimension 144 x 55 and contains clinical variables for the 144 individuals. `'rnaseq'`, `'methyl'`, `'cna'`, and `'mirna'` are of dimension 13 (genes) or 1 (miRNAs) x 144 (samples), where the row names contain the gene symbol or miRNA name.

### Source

TCGA

### References

The Cancer Genome Atlas Research Network (2014) Nature 511, 543-550. https://doi.org/10.1038/nature13385.

Rau et al. (2019) bioRxiv, https://doi.org/10.1101/827022.

### Examples

    data(LUAD_subset)
    head(LUAD_subset)

[Package padma version 1.0.0 Index]