cellTypeToGO {ontoProc} | R Documentation

## utilities for approximate matching of cell type terms to GO categories and annotations

### Description

utilities for approximate matching of cell type terms to GO categories and annotations

### Usage

    cellTypeToGO(celltypeString, gotab, ...)

    cellTypeToGenes(
      celltypeString,
      gotab,
      orgDb,
      cols = c("ENSEMBL", "SYMBOL"),
      ...
    )

### Arguments

`celltypeString` | character atom to be used to search GO terms using
`gotab` | a data.frame with columns GO (goids) and TERM (term strings) `agrep`
`...` | additional arguments to `agrep`
`orgDb` | instances of orgDb
`cols` | columns to be retrieved in select operation

### Value

data.frame

data.frame

### Note

Very primitive, uses agrep to try to find relevant terms.

### Examples

    library(org.Hs.eg.db)
    head(cellTypeToGO("serotonergic neuron", ontoProc::allGOterms))
    head(cellTypeToGenes("serotonergic neuron", ontoProc::allGOterms, org.Hs.eg.db))

[Package ontoProc version 1.12.0 Index]