sym2CellOnto {ontoProc} | R Documentation

## use Cell Ontology and Protein Ontology to identify cell-type defining conditions in which a given gene is named

### Description

use Cell Ontology and Protein Ontology to identify cell-type defining conditions in which a given gene is named

### Usage

    sym2CellOnto(sym, cl, pr)

### Arguments

`sym` | gene symbol, must be used in protein ontology as a PRO:DNx exact match token
`cl` | result of getCellOnto()
`pr` | result of getPROnto()

### Value

DataFrame if any hits are found. A field 'cond' abbreviates the identified conditions: (has/lacks)PMP (plasma membrane part) (hi/lo)PMAmt (plasma membrane amount), (has/lacks)Part.

### Note

Currently just checks for *plasma_membrane_part, *plasma_membrane_amount, and *Part conditions.

### Examples

    if (!exists("cl")) cl = getCellOnto()
    if (!exists("pr")) pr = getPROnto()
    sym2CellOnto("ITGAM", cl, pr)
    sym2CellOnto("FOXP3", cl, pr)

[Package ontoProc version 1.12.0 Index]