bind_formal_tags {ontoProc} | R Documentation

## add mapping from informal to formal cell type tags to a SummarizedExperiment colData

### Description

add mapping from informal to formal cell type tags to a SummarizedExperiment colData

### Usage

    bind_formal_tags(se, informal, tagmap, force = FALSE)

### Arguments

`se` | SummarizedExperiment instance
`informal` | character(1) name of colData element with uncontrolled vocabulary
`tagmap` | data.frame with columns 'informal' and 'formal'
`force` | logical(1), defaults to FALSE; if TRUE, allows clobbering existing colData variable named "formal"

### Value

SummarizedExperiment instance with a new colData column 'label.ont' giving the formal tags associated with each sample

### Note

This function will fail if the value of 'informal' is not among the colData variable names, or if "formal" is among the colData variable names.

[Package ontoProc version 1.12.0 Index]