maxAdapterContent {ngsReports} | R Documentation

## Get the maximum Adapter Content

### Description

Get the maximum Adapter Content across one or more FASTQC reports

### Usage

    maxAdapterContent(x, asPercent = TRUE)

### Arguments

`x` | Can be a `.FastqcFile`, `FastqcData`, `FastqcDataList` or path
`asPercent` | `logical`. Format the values as percentages with the added `%` symbol

### Details

This will extract the `Adapter_Content` module from the supplied object, and provide a `tibble` with the final value for each file.

### Value

A `tibble` object containing the percent of reads with each adapter type at the final position

### Examples

    # Get the files included with the package
    packageDir <- system.file("extdata", package = "ngsReports")
    fl <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE)

    # Load the FASTQC data as a FastqcDataList object
    fdl <- FastqcDataList(fl)

    # Get the maxAdapterContent
    maxAdapterContent(fdl)

[Package ngsReports version 1.6.1 Index]