countIntType {netDx} | R Documentation

## Counts the number of (+,+) and (+,-) interactions in a single network

### Description

Counts the number of (+,+) and (+,-) interactions in a single network

### Usage

    countIntType(inFile, plusID, minusID)

### Arguments

`inFile` | (char) path to interaction networks
`plusID` | (char) vector of + nodes
`minusID` | (char) vector of - nodes

### Value

(numeric of length 2) Number of (+,+) interactions, and non-(+,+) interactions (i.e. (+,-) and (-,-) interactions)

### Examples

    d <- tempdir()
    # write PSN
    m1 <- matrix(c("P1","P1","P2","P2","P3","P4",1,1,1),byrow=FALSE,ncol=3)
    write.table(m1,file=paste(d,"net1.txt",sep=getFileSep()),
    sep="\t",
    col.names=FALSE,row.names=FALSE,quote=FALSE)

    countIntType(paste(d,"net1.txt",sep=getFileSep()),c("P1","P2","P3"),
    c("P4","P5"))

[Package netDx version 1.1.4 Index]