runStereogene {nearBynding} | R Documentation

## runStereogene

### Description

Writes a StereoGene script in the working directory

### Usage

    runStereogene(track_files, name_config, pcorProfile = NULL, confounder = NULL)

### Arguments

`track_files` | Vector of at least two track or interval file names to be pairwise-correlated by StereoGene. Required.
`name_config` | Name of corresponding configuration file; a string. Required
`pcorProfile` | Name of track file name for partial correlation; a string. More information for this can be found in the StereoGene README. Optional
`confounder` | Confounder file name; a string. More information for this can be found in the StereoGene README. Optional

### Value

generates StereoGene output files in directory

### Examples

    runStereogene(track_files = c("chr4and5_3UTR_stem_liftOver.bedGraph",
                                    "chr4and5_liftOver.bedGraph"),
                    name_config = "chr4and5_3UTR.cfg")

[Package nearBynding version 1.0.0 Index]