# Discern RNA structure proximal to protein binding

## Documentation for package ‘nearBynding’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

nearBynding-package | Discern RNA structure proximal to protein binding
assessGrouping | assessGrouping
bindingContextDistance | bindingContextDistance
bindingContextDistanceCapR | bindingContextDistanceCapR
CleanBAMtoBG | CleanBAMtoBG
CleanBEDtoBG | CleanBEDtoBG
ExtractTranscriptomeSequence | ExtractTranscriptomeSequence
GenomeMappingToChainFile | GenomeMappingToChainFile
getChainChrSize | getChainChrSize
get_outfiles | get_outfiles
liftOverToExomicBG | liftOverToExomicBG
nearBynding | Discern RNA structure proximal to protein binding
processCapRout | processCapRout
runCapR | runCapR
runStereogene | runStereogene
runStereogeneOnCapR | runStereogeneOnCapR
visualizeCapRStereogene | visualizeCapRStereogene
visualizeStereogene | visualizeStereogene
write_config | write_config
write_fasta | write_fasta