nearBynding-package	nearBynding-package
assessGrouping	assessGrouping
bindingContextDistance	bindingContextDistance
bindingContextDistanceCapR	bindingContextDistanceCapR
CleanBAMtoBG	CleanBAMtoBG
CleanBEDtoBG	CleanBEDtoBG
ExtractTranscriptomeSequence	ExtractTranscriptomeSequence
GenomeMappingToChainFile	GenomeMappingToChainFile
getChainChrSize	getChainChrSize
get_outfiles	get_outfiles
liftOverToExomicBG	liftOverToExomicBG
nearBynding	nearBynding-package
processCapRout	processCapRout
runCapR	runCapR
runStereogene	runStereogene
runStereogeneOnCapR	runStereogeneOnCapR
visualizeCapRStereogene	visualizeCapRStereogene
visualizeStereogene	visualizeStereogene
write_config	write_config
write_fasta	write_fasta
