DGV_extraction          Frequency calculation of variants compared to
                        DGV.
Decipher_extraction     Frequency calculation of variants compared to
                        DGV.
buildrunBNBedFiles      Reads BED files to produce bionano Bed files
clinvar_gene            Extracting genes from clinvar database NCBI.
cohortFrequency         Calculates the internal frequencies of SV in
                        bionano cohorts
compSmapbed             Extracts gene information from bed files
gene_extraction         Extracting genes from gene database NCBI.
gene_list_generation    Extracting genes for phenotype/diseases from
                        NCBI.
gtr_gene                Extracting genes from gtr database NCBI.
internalFrequency       Calculates the internal frequencies of SV in
                        internal cohorts
makeMergedSVData        Merges Solo SV files to one common SV file
makeMergedSmapData      Merges Bionano SV files to one common SV file
nanotatoR               nanotatoR: Annotation package for Bionano Data
nanotatoR_main          Annotation of Bionano SV.
nonOverlapGenes         Calculates Genes that are near to the SV region
omim_gene               Extracting genes from OMIM database NCBI.
overlapGenes            Calculates Genes that overlap the SV region
readBNBedFiles          Reads Bionano Bedfiles
readSMap                Reads SMAP files to extract information
run_bionano_filter      Getting the data from annotated smaps to
                        extract SV information based on type of
                        variants.
