extract_variants_from_maf {musicatk} | R Documentation

## Extract variants from a maf object

### Description

Add description

### Usage

    extract_variants_from_maf(maf, extra_fields = NULL)

### Arguments

`maf` | MAF object loaded by read.maf() from the 'maftools' package
`extra_fields` | Optionally extract additional columns from the maf object. Default `NULL`.

### Value

Returns a data.table of variants from a maf which can be used to create a `musica` object.

### Examples

    maf_file <- system.file("extdata", "public_TCGA.LUSC.maf",
    package = "musicatk")
    library(maftools)
    maf <- read.maf(maf_file)
    variants <- extract_variants_from_maf(maf = maf)

[Package musicatk version 1.0.0 Index]