compare_cosmic_v3 {musicatk} | R Documentation

## Compare a result object to COSMIC V3 Signatures; Select exome or genome for SBS and only genome for DBS or Indel classes

### Description

Compare a result object to COSMIC V3 Signatures; Select exome or genome for SBS and only genome for DBS or Indel classes

### Usage

    compare_cosmic_v3(
      result,
      variant_class,
      sample_type,
      metric = "cosine",
      threshold = 0.9,
      result_name = deparse(substitute(result))
    )

### Arguments

`result` | A `musica_result` object.
`variant_class` | Compare to SBS, DBS, or Indel
`sample_type` | exome (SBS only) or genome
`metric` | One of `"cosine"` for cosine similarity or `"jsd"` for 1 minus the Jensen-Shannon Divergence. Default `"cosine"`.
`threshold` | threshold for similarity
`result_name` | title for plot user result signatures

### Value

Returns the comparisons

### Examples

    data(res)
    compare_cosmic_v3(res, "SBS", "genome", threshold = 0.8)

[Package musicatk version 1.0.0 Index]