count_table-class {musicatk} | R Documentation

## Object containing the count table matrices, their names and descriptions that we generated by provided and by user functions. These are used to discover and infer signatures and exposures.

### Description

Object containing the count table matrices, their names and descriptions that we generated by provided and by user functions. These are used to discover and infer signatures and exposures.

### Slots

`name`

  A name that describes the type of table (e.g. "SBS96")

`count_table`

  An array of counts with samples as the columns and motifs as the rows

`annotation`

  A data.frame of annotations with three columns used for plotting: motif, mutation, and context

`features`

  Original features used to generate the count_table

`type`

  The mutation type of each feature, in case we need to plot or model they differently

`color_variable`

  The variable used for plotting colors, selected from the annotation slot

`color_mapping`

  The mapping of the annotations chosen by color_variable to color values for plotting

`description`

  A summary table of the result objects in result_list a list of lists. The nested lists created combined (rbind) tables, and the tables at the first list level are modelled independantly. Combined tables must be named. list("tableA", comboTable = list("tableC", "tableD"))

[Package musicatk version 1.0.0 Index]