getDistance {motifStack} | R Documentation

## Calculate distances between two profiles

### Description

Calculate distances between two profiles

### Usage

    getDistance(hsp, count1, count2, P1, P2, pseudo)

### Arguments

`hsp` | output of traceBack function
`count1, count2` | motif profile 1 or 2
`P1, P2` | background of profile 1 or 2
`pseudo` | pseudocount

### Value

full distance and aligned distance.

[Package motifStack version 1.34.0 Index]