detectGenes {monocle} | R Documentation

## Detects genes above minimum threshold.

### Description

Sets the global expression detection threshold to be used with this CellDataSet. Counts how many cells each feature in a CellDataSet object that are detectably expressed above a minimum threshold. Also counts the number of genes above this threshold are detectable in each cell.

### Usage

    detectGenes(cds, min_expr = NULL)

### Arguments

`cds` | the CellDataSet upon which to perform this operation
`min_expr` | the expression threshold

### Value

an updated CellDataSet object

### Examples

    ## Not run:
    HSMM <- detectGenes(HSMM, min_expr=0.1)

    ## End(Not run)

[Package monocle version 2.18.0 Index]