moa.sup-class {mogsa} | R Documentation

## Class `"moa.sup"`

### Description

moa.sup class desc.

### Objects from the Class

Objects can be created by calls of the form `new("moa.sup", ...)`.

### Slots

`sup`:

  Object of class `"list"`, the matrix of supplementary data.

`coord.sep`:

  The projection of geneset infromation on each separate data.

`coord.comb`:

  The projection of geneset infromation on total dataset.

`score`:

  the gene set-sample pathway score

`score.data`:

  the gene set-sample pathway score, data separate

`score.pc`:

  the gene set-sample pathway score, PC separate

`score.sep`:

  the gene set-sample pathway score, separate.

`p.val`:

  the p value matrix have the same dimension with score matrix.

`p.val.corrected`:

  the matrix of corrected p values.

### Methods

There is no generic function for objects of "moa.sup", but have specific function, including: - decompose.gs.ind - box.gs.feature - plotGS - decompose.gs.group

### Author(s)

Chen Meng

### See Also

objects to See Also as `decompose.gs.ind`, `box.gs.feature`, `plotGS`, `decompose.gs.group`.

### Examples

    	showClass("moa.sup")
    	data(NCI60_4array_supdata)
    	data(NCI60_4arrays)

    	sapply(NCI60_4array_supdata, dim)
    	ana <- moa(NCI60_4arrays, proc.row = "center_ssq1", w.data = "inertia", statis = TRUE)
    	plot(ana, value="eig")
    	smoa <- sup.moa(ana, sup=NCI60_4array_supdata, nf=5)

[Package mogsa version 1.24.0 Index]