microbiome-package	microbiome-package
ab,	abundances
abundances	abundances
aggregate_rare	aggregate_rare
aggregate_taxa	aggregate_taxa
aggregate_top_taxa	aggregate_top_taxa
alpha	alpha
associate	associate
atlas1006	atlas1006
baseline	baseline
bfratio	bfratio
bimodality	bimodality
bimodality_sarle	bimodality_sarle
boxplot_abundance	boxplot_abundance
chunk_reorder	chunk_reorder
cmat2table	cmat2table
collapse_replicates	collapse_replicates
core	core
core_abundance	core_abundance
core_heatmap	core_heatmap
core_matrix	core_matrix
core_members	core_members
coverage	coverage
cross_correlate	associate
default_colors	default_colors
densityplot	densityplot
dietswap	dietswap
divergence	divergence
diversities	diversities
diversity	diversity
dominance	dominance
dominant	dominant
estimate_stability	estimate_stability
evenness	evenness
filter_prevalent	core
find_optima	find_optima
gktau	gktau
global	global
group_age	group_age
group_bmi	group_bmi
heat	heat
hitchip.taxonomy	hitchip.taxonomy
hotplot	hotplot
inequality	inequality
intermediate_stability	intermediate_stability
is_compositional	is_compositional
log_modulo_skewness	log_modulo_skewness
low_abundance	low_abundance
map_levels	map_levels
merge_taxa2	merge_taxa2
meta	meta
microbiome	microbiome-package
multimodality	multimodality
neat	neat
neatsort	neatsort
otu	abundances
overlap	overlap
peerj32	peerj32
plot_atlas	plot_atlas
plot_composition	plot_composition
plot_core	plot_core
plot_density	plot_density
plot_frequencies	plot_frequencies
plot_landscape	plot_landscape
plot_regression	plot_regression
plot_taxa_prevalence	plot_taxa_prevalence
plot_tipping	plot_tipping
potential_analysis	potential_analysis
potential_univariate	potential_univariate
prevalence	prevalence
prevalent_taxa	core_members
quiet	quiet
radial_theta	radial_theta
rare	rare
rare_abundance	rare_abundance
rare_members	rare_members
rarity	rarity
readcount	readcount
read_biom2phyloseq	read_biom2phyloseq
read_csv2phyloseq	read_csv2phyloseq
read_mothur2phyloseq	read_mothur2phyloseq
read_phyloseq	read_phyloseq
remove_samples	remove_samples
remove_taxa	remove_taxa
richness	richness
spreadplot	spreadplot
summarize_phyloseq	summarize_phyloseq
taxa	taxa
timesplit	timesplit
time_normalize	time_normalize
time_sort	time_sort
top	top
top_taxa	top_taxa
transform	transform
write_phyloseq	write_phyloseq
ztransform	ztransform
