pmultinom {methylMnM} | R Documentation

## Call C programs to R.

### Description

Call C programs to R for calculate p-value of each bin with multinomial distribution.

### Usage

    pmultinom(T, SIZE,length, P1, P2, P3, P4, C1, C2,
     pvalue=rep(0,length(T)))

### Arguments

`T` | Statistic.
`SIZE` | The sum of MeDIP-seq count and MRE-seq count of each bin of two samples.
`length` | The number of bins.
`P1` | The probability of MeDIP-seq of sample 1 in multinomial distribution.
`P2` | The probability of MeDIP-seq of sample 2 in multinomial distribution.
`P3` | The probability of MRE-seq of sample 1 in multinomial distribution.
`P4` | The probability of MRE-seq of sample 2 in multinomial distribution.
`C1` | A constant to balance MeDIP-seq of sample 1 and sample 2.
`C2` | A constant to balance MRE-seq of sample 1 and sample 2.
`pvalue` | p-values of windows.

### Value

p-value.

### Author(s)

Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang

### Examples

    T<-4
    SIZE<-200
    p<-c(0.25,0.25,0.25,0.25)
    c1<-1
    c2<-1
    length<-1
    f<-pmultinom(T, SIZE,length, p[1], p[2], p[3], p[4], c1,
     c2, pvalue=rep(0,length(T)))

[Package methylMnM version 1.28.0 Index]