getCoverage {methyAnalysis} | R Documentation

## get the coverage based on a given GRanges object

### Description

calculate the average coverage on each element of a given GRanges object

### Usage

    getCoverage(grange, coverage, startOnly = FALSE, as.GRanges = FALSE)

### Arguments

`grange` | GRanges object specify the genome locations to get coverage
`coverage` | the genome coverage (a RleList object) output by NGS pipeline
`startOnly` | whether to calculate the coverage based on the start location or the average of the entire GRanges element
`as.GRanges` | whether return a GRanges object or a vector of coverage

### Value

a vector of coverage or a GRanges object (as.GRanges is TRUE)

### Author(s)

Pan Du

[Package methyAnalysis version 1.31.0 Index]