plot_coverage {methrix} | R Documentation

## Coverage QC Plots

### Description

Coverage QC Plots

### Usage

    plot_coverage(
      m,
      type = c("hist", "dens"),
      pheno = NULL,
      perGroup = FALSE,
      lim = 100,
      size.lim = 1e+06,
      col_palette = "RdYlGn"
    )

### Arguments

`m` | Input `methrix` object
`type` | Choose between 'hist' (histogram) or 'dens' (density plot).
`pheno` | Column name of colData(m). Will be used as a factor to color different groups in the plot.
`perGroup` | Color the plots in a sample-wise manner?
`lim` | Maximum coverage value to be plotted.
`size.lim` | The maximum number of observarions (sites*samples) to use. If the dataset is larger that this, random sites will be selected from the genome.
`col_palette` | Name of the RColorBrewer palette to use for plotting.

### Value

ggplot2 object

### Examples

    data('methrix_data')
    plot_coverage(m = methrix_data)

[Package methrix version 1.4.07 Index]