Package: metaseqR
Type: Package
Title: An R package for the analysis and result reporting of RNA-Seq
        data by combining multiple statistical algorithms.
Author: Panagiotis Moulos <moulos@fleming.gr>
Maintainer: Panagiotis Moulos <moulos@fleming.gr>
Depends: R (>= 3.4.0), EDASeq, DESeq, limma, qvalue
Imports: edgeR, NOISeq, baySeq, NBPSeq, biomaRt, utils, gplots,
        corrplot, vsn, brew, rjson, log4r
Suggests: BiocGenerics, GenomicRanges, rtracklayer, Rsamtools,
        survcomp, VennDiagram, knitr, zoo, RUnit, BiocManager,
        BSgenome, RSQLite
Enhances: parallel, TCC, RMySQL
Description: Provides an interface to several normalization and
    statistical testing packages for RNA-Seq gene expression data.
    Additionally, it creates several diagnostic plots, performs
    meta-analysis by combinining the results of several statistical
    tests and reports the results in an interactive way.
License: GPL (>= 3)
Encoding: UTF-8
LazyLoad: yes
LazyData: yes
URL: http://www.fleming.gr
biocViews: ImmunoOncology, Software, GeneExpression,
        DifferentialExpression, WorkflowStep, Preprocessing,
        QualityControl, Normalization, ReportWriting, RNASeq
VignetteBuilder: knitr
Authors@R: c(person(given="Panagiotis", family="Moulos",
    email="moulos@fleming.gr", role=c("aut", "cre")))
Version: 1.30.0
Date: 2020-04-04
Collate: 'metaseqr.annotation.R' 'metaseqr.argcheck.R'
        'metaseqr.count.R' 'metaseqr-data.R' 'metaseqr.export.R'
        'metaseqr.filter.R' 'metaseqr.json.R' 'metaseqr.main.R'
        'metaseqr.meta.R' 'metaseqr.norm.R' 'metaseqR-package.R'
        'metaseqr.plot.R' 'metaseqr.query.R' 'metaseqr.sim.R'
        'metaseqr.stat.R' 'metaseqr.util.R' 'zzz.R'
PackageStatus: Deprecated
git_url: https://git.bioconductor.org/packages/metaseqR
git_branch: RELEASE_3_12
git_last_commit: 42215cd
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 02:44:51 UTC; biocbuild
Built: R 4.0.3; ; 2020-10-28 14:39:07 UTC; windows
