diagplot.noiseq.saturation {metaseqR} | R Documentation

## Simpler implementation of saturation plots inspired from NOISeq package

### Description

Helper function for `diagplot.noiseq` to plot feature detection saturation as presented in the NOISeq package vignette. It has two main outputs: a set of figures, one for each input sample depicting the saturation for each biotype and one single multiplot which depicts the saturation of all samples for each biotype. It expands the saturation plots of NOISeq by allowing more samples to be examined in a simpler way. Don't use this function directly. Use either `diagplot.metaseqr` or `diagplot.noiseq`.

### Usage

        diagplot.noiseq.saturation(x, o, tb, path = NULL)

### Arguments

`x` | the count data matrix.
`o` | one or more R plotting device to direct the plot result to. Supported mechanisms: `"x11"` (default), `"png"`, `"jpg"`, `"bmp"`, `"pdf"` or `"ps"`.
`tb` | the vector of biotypes, one for each row of x.
`path` | the path to create output files.

### Value

The filenames of the plots produced in a named list with names the `which.plot` argument. If `output="x11"`, no output filenames are produced.

### Author(s)

Panagiotis Moulos

[Package metaseqR version 1.30.0 Index]