makeSimDataTcc {metaseqR2} | R Documentation

## Create simulated counts using TCC package

### Description

This function creates simulated RNA-Seq gene expression datasets using the `simulateReadCounts` function from the Bioconductor package TCC and it adds simulated annoation elements. For further information please consult the TCC package documentation.

### Usage

        makeSimDataTcc(...)

### Arguments

`...` | parameters to the `simulateReadCounts` function.

### Value

A list with the following members: `simdata` holding the simulated dataset complying with metaseqr2 requirements, and `simparam` holding the simulation parameters (see TCC documentation). Note that the produced data are based in an Arabidopsis dataset.

### Author(s)

Panagiotis Moulos

### Examples

    if (require(TCC)) {
    dd <- makeSimDataTcc(Ngene=1000,PDEG=0.2,
        DEG.assign=c(0.9,0.1),
        DEG.foldchange=c(5,5),replicates=c(3,3))
    head(dd$simdata)
    }

[Package metaseqR2 version 1.2.0 Index]