ISOdesign {maSigPro} | R Documentation

## Experimental design for ISOdata dataset example

### Description

`ISOdesign` is the experimental design to apply ISOmaSigPro to ISOdata dataset example.

### Usage

    data(ISOdesign)

### Format

A matrix with 36 rows and 4 colums

rownames(ISOdesign) "Gr1_0h_1" "Gr1_0h_2" "Gr1_0h_3" "Gr1_2h_1" "Gr1_2h_2" "Gr1_2h_3" "Gr1_6h_1" "Gr1_6h_2" "Gr1_6h_3" "Gr1_12h_1" "Gr1_12h_2" "Gr1_12h_3" "Gr1_18h_1" "Gr1_18h_2" "Gr1_18h_3" "Gr1_24h_1" "Gr1_24h_2" "Gr1_24h_3" "Gr2_0h_1" "Gr2_0h_2" "Gr2_0h_3" "Gr2_2h_1" "Gr2_2h_2" "Gr2_2h_3" "Gr2_6h_1" "Gr2_6h_2" "Gr2_6h_3" "Gr2_12h_1" "Gr2_12h_2" "Gr2_12h_3" "Gr2_18h_1" "Gr2_18h_2" "Gr2_18h_3" "Gr2_24h_1" "Gr2_24h_2" "Gr2_24h_3"

colnames(ISOdesign) "time" "replicate" "Group1" "Group2"

### Details

Samples are given in rows and experiment descriptors are given in columns. Row names contain sample names.

`"time"` indicates the values that variable Time takes in each experimental condition. There are 6 time points.

`"replicate"` is an index indicating the same experimental condition.

`"Group1"` and `"Group2"` columns indicate assigment to experimental groups, coding with 1 and 0 whether each sample belongs to that group or not.

### Examples

    data(ISOdata)
    data(ISOdesign)

    mdis <- make.design.matrix(ISOdesign)
    MyIso <- IsoModel(data=ISOdata[,-1], gen=ISOdata[,1], design=mdis, counts=TRUE)

[Package maSigPro version 1.62.0 Index]