IsomirDataSeqFromMirtop {isomiRs} | R Documentation

## Import `mirtop` output into `IsomirDataSeq`

### Description

The tabular output of mirtop is compatible with IsomirDataSeq. This function allows to import the data and filter low confidence isomiRs for downstream analysis.

### Usage

    IsomirDataSeqFromMirtop(mirtop, coldata, ...)

### Arguments

`mirtop` | data.frame with the output of `mirtop export`
`coldata` | data.frame with the metadata of the samples
`...` | It supports the same parameters as in IsomirDataSeqFromRawData.

### Details

The output is generated with `mirtop export --format isomir`.

### Value

IsomirDataSeq class object.

### Examples

    library(readr)
    path <- system.file("extra", "mirtop", package="isomiRs")
    fn <- list.files(path, full.names = TRUE)
    de <- data.frame(row.names=c("sample1" , "sample2"),
                     condition = c("cc", "cc"))
    # mirtop export --format isomir ....
    IsomirDataSeqFromMirtop(read_tsv(fn), de)

[Package isomiRs version 1.18.1 Index]