getWellFeatures {imageHTS} | R Documentation

## Get well metadata, features and annotation information

### Description

Get well metadata, features and annotation information.

### Usage

      getWellFeatures(x, uname, feature=TRUE)

### Arguments

`x` | An imageHTS object.
`uname` | a character vector, containing well names. See `getUnames` for details.
`feature` | A character vectors containing the requested features. Default is `TRUE`, returning all well features.

### Details

`getWellFeatures` return `fData`, the well features loaded during the `configure` and `annotate` steps. Features include: `controlStatus`, the well content status derived from \'plateconf.txt\'.

### Value

Returns a data frame containing well features.

### Author(s)

Gregoire Pau, gregoire.pau@embl.de, 2010

### See Also

`fData`, `configure`, `annotate`

### Examples

    ## initialize imageHTS object using the local submorph screen
    local = tempdir()
    server = system.file('submorph', package='imageHTS')
    x = parseImageConf('conf/imageconf.txt', localPath=local, serverURL=server)
    x = configure(x, 'conf/description.txt', 'conf/plateconf.txt', 'conf/screenlog.txt')
    x = annotate(x, 'conf/annotation.txt')

    ## select non-empty wells
    unames = setdiff(getUnames(x), getUnames(x, content='empty'))
    getWellFeatures(x, unames)

[Package imageHTS version 1.40.0 Index]