efd275699c1af73f177feba218748e85 *CITATION
9b420ffc6eefe64a2d2815254e1a17fa *DESCRIPTION
987db8192500f38c1c81b18b29782c34 *INDEX
29a9012941a6bcb26bf0fb4382c5dd75 *LICENSE
b4a0b5a11c1f8b93570794b40ae515c0 *Meta/Rd.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
081f140d87109666641a5bb21da6381d *Meta/hsearch.rds
23c6da934eca76636aeba203d0a08eb1 *Meta/links.rds
11a9f8d78a0b73af6a7f7214155c4f47 *Meta/nsInfo.rds
6ec5a64fc632598514a07a0c131d9e17 *Meta/package.rds
cf2ca48ac45fde049e8aa8165f6b3d86 *Meta/vignette.rds
d16a08dcb01db5d9628367e8ce4e09a0 *NAMESPACE
437dd3e137bfdae796424eddcd50cd8b *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/icetea
e8c3d4cd8b8b037029ca5cb730f78de4 *R/icetea.rdb
d19bc71936f71afe610e6bcca2249621 *R/icetea.rdx
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6e1a6d3738ac8b80ce34043df416c3fe *doc/mapcap_analysis.R
e9a45049b7fb37f1e1a3bec42fe17b45 *doc/mapcap_analysis.Rmd
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de8b916f9c226200f79c6f55feb85f55 *extdata/bam/embryo1.bam
91e831f3cd3c9f15a9cbc65a5256bdb2 *extdata/bam/embryo1.bam.bai
6f81004281be96947b0a7aec3fd708e9 *extdata/bam/embryo2.bam
d1a7d506ca48f8dfb57fdd27040e8f8f *extdata/bam/embryo2.bam.bai
6f6a1daa30ac3259ea3446b972abcb30 *extdata/bam/embryo3.bam
e9de33af380be5880cfac7aaec779d24 *extdata/bam/embryo3.bam.bai
aec2b788554ef9596a83903bf43de44e *extdata/bam/embryo4.bam
d8936a1cd8f09891df42ecc85f49424a *extdata/bam/embryo4.bam.bai
0c3c740f5e29282a59189275a59021fd *extdata/demult_fastq/embryo1_R1.fastq.gz
bb8a38293ae9c019a76ce993f1acd7ed *extdata/demult_fastq/embryo1_R2.fastq.gz
4b5ba8fca80d6db6eb9a806c1559e828 *extdata/demult_fastq/embryo2_R1.fastq.gz
260725b25ec4e7e437701e2e8f6a6537 *extdata/demult_fastq/embryo2_R2.fastq.gz
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2f4738c18f72cf9bbe1fbe8ac2bf3d2a *extdata/demult_fastq/embryo3_R2.fastq.gz
33836d593cf2d34191e6d9105c28a907 *extdata/demult_fastq/embryo4_R1.fastq.gz
66177ebfbe632de38653de30e626b104 *extdata/demult_fastq/embryo4_R2.fastq.gz
5892afab3371f7e667c4cd3ffa09f4c0 *extdata/filtered_bam/embryo1.filtered.bam
1d08ad34edc7c3dc9969510759247ac8 *extdata/filtered_bam/embryo1.filtered.bam.bai
2cd6075b990efdd8c87fae97df066e06 *extdata/filtered_bam/embryo2.filtered.bam
567e663f982757e1400a5dd3aefd6279 *extdata/filtered_bam/embryo2.filtered.bam.bai
76e22c135d7a09158387e33ca6d1ff9a *extdata/filtered_bam/embryo3.filtered.bam
3648e402b54371182c11737b521615b2 *extdata/filtered_bam/embryo3.filtered.bam.bai
f245afc12a17c7eff49f9d37f803ac72 *extdata/filtered_bam/embryo4.filtered.bam
c417c9d32ffbab6cfb1a11fc6996e409 *extdata/filtered_bam/embryo4.filtered.bam.bai
f9d63ca9f8a24353ec3282ace47b1a41 *extdata/mapcap_test_R1.fastq.gz
c501e7171f176d240536655600de70ed *extdata/mapcap_test_R2.fastq.gz
57e4621cc32dbcd98aac583bcbc152be *extdata/testTSS_grl.rds
2d25320c06c1ce89e17f5eac3b14db60 *extdata/testTSS_merged.bed
2826477a60053fae01f90d97e386d8e3 *help/AnIndex
626984e41556b297edb1a40fce42e6da *help/aliases.rds
0bd4a5fde4dcf389ce7e11f04915010a *help/icetea.rdb
a76b048fe00078db7602a99ec3da545e *help/icetea.rdx
c8b98b89b14238f9353e6179a9fe6390 *help/paths.rds
d4b30436bc4149ebfc19b936c6048d54 *html/00Index.html
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3bb0fa0a78a056af62b97aa38a2620a9 *html/activeChrs.html
03293865fb57b68ab18d3bd036b45753 *html/annotateTSS.html
f4666923c935b6c9d2a28f39435e0ebe *html/check_capSet.html
07bd39df295e4237df8f63ee5f1fa6b3 *html/demultiplexFASTQ.html
f9701238cd71d16c3252040223caaf98 *html/detectDiffTSS.html
eae805a33c6553494592d3593fcd5ebb *html/detectTSS.html
7dd9e0b378cd79cae2dd0f8e3e04067b *html/diffQCplots.html
a3879597e2c897d4baf4506f2d6112f0 *html/exampleCSobject.html
ce63be0cc9e8a14dea9374a8f3dee07c *html/exportTSS.html
076fe3da9a86a384b500b370c84202f4 *html/filterDuplicates.html
47e6437484a7bcda3b34b4627adb91a1 *html/filterDups.html
39727a57d487c3256f0dd8631984fdd6 *html/fitDiffTSS.html
2bc93e94f7869cb937760c6b8ac39b26 *html/getBamFlags.html
404c551b6679f8bf37aec3fc4e352a0a *html/getChromBins.html
eaa372659b0fa36dbb3d9c757cc8dbfb *html/getChromWindows.html
ecbac8af46de4b15897c7714c273b343 *html/getGeneCounts.html
23f0ee2ae6c7a8dd0b05ee756de2eec0 *html/getMCparams.html
9d7051bf5bdd1196ebd0cb68961e0367 *html/getNormFactors.html
974a112856d8e5c85e5a712c509039aa *html/get_newfastq.html
f31835e19c911e0e58dc184499816a3b *html/getranks.html
d95fd8a9f5d20073ceaf8cc2c81c72a0 *html/mapCaps.html
1741f3f30aea6cf392e5a01e45578d59 *html/newCapSet.html
3b040018f235482149c2641380dcbf1b *html/numReadsInBed.html
1daba05040fc1c30015f49d32d2e03d3 *html/plotPrecision.html
35e321f1e78af89e165c40fc63399f40 *html/plotReadStats.html
f2d40ca39f43c100342c8868a24e9730 *html/plotTSSprecision.html
f714813c86df6190bf5de3a13a8d53c1 *html/readsTo3p.html
d68dc1ad0910009a020279a05d0c06c3 *html/readsTo5p.html
f1d48910b38f5bfd5bce6c301ad455d1 *html/readsToCenter.html
3e793109047d05477e0a267f134bc0d2 *html/sampleInfo.html
c8c260743e6f92e7b8c201e9936be9d3 *html/splitBAM_byIndex.html
1de4cc418417b953369777e89e54db6e *html/splitBAM_byRepindex.html
e740323d94007435e2389834f78069cf *html/split_fastq.html
546e69a0adb7587a02d88f666fd769ac *html/splitranks.html
594caa6c02f7e97869e0c714e917a002 *html/strandBinCounts.html
