strandBinCounts {icetea} | R Documentation

## Perform stranded Bin counts

### Description

Perform stranded Bin counts

### Usage

    strandBinCounts(
      bam.files,
      restrictChrs,
      bam_param,
      bp_param,
      window_size,
      sliding = FALSE,
      func
    )

### Arguments

`bam.files` | character vector. BAM files to use
`restrictChrs` | character vector. chromosomes to use
`bam_param` | ScanBAMParams
`bp_param` | BPPARAM
`window_size` | integer. size of window to use
`sliding` | logical. perform sliding window counts?
`func` | function to preprocess reads

### Value

RangedSE object with forward and reverse strand counts

[Package icetea version 1.8.0 Index]