diffQCplots {icetea} | R Documentation

## Make DESeq2 or edgeR QC plots

### Description

Make DESeq2 or edgeR QC plots

### Usage

    diffQCplots(method, fit, y, designMat)

### Arguments

`method` | one of "DESeq2" or "edgeR"
`fit` | output of fitDiffTSS (if method = "edgeR")
`y` | output of fitDiffTSS (if method = "DESeq2")
`designMat` | design matrix (data frame)

### Value

Sparsity, dispersion and PCA plot (if method = DESeq2), BCV, dispersion and MDS plot (if method = "edgeR")

[Package icetea version 1.8.0 Index]