utils-de {iSEEu} | R Documentation

## Acceptable fields for DE panels

### Description

Set or get the acceptable fields to use for all Panel instances related to differential expression, including VolcanoPlot and MAPlot. These functions are now deprecated.

### Usage

    .getAcceptablePValueFields()

    .getAcceptableLogFCFields()

    .getAcceptableAveAbFields()

    .setAcceptablePValueFields(value)

    .setAcceptableLogFCFields(value)

    .setAcceptableAveAbFields(value)

### Arguments

`value` | Character vector of acceptable fields (usually in the `rowData`) for a given statistic.

### Value

`.getAcceptablePValueFields` will return a character vector of acceptable names for p-value fields.

`.getAcceptableLogFCFields` will return a character vector of acceptable names for log-FC fields.

`.getAcceptableAveAbFields` will return a character vector of acceptable names for average abundance fields.

The setter functions will define the set of acceptable fields and return `NULL` invisibly.

### Author(s)

Aaron Lun

### Examples

    old <- .getAcceptablePValueFields()
    old

    .setAcceptablePValueFields("YAY")
    .getAcceptablePValueFields()

    # Restoring.
    .setAcceptablePValueFields(old)

[Package iSEEu version 1.2.0 Index]