as.list.glmGamPoi {glmGamPoi} | R Documentation

## Convert glmGamPoi object to a list

### Description

Convert glmGamPoi object to a list

### Usage

    ## S3 method for class 'glmGamPoi'
    as.list(x, ...)

### Arguments

`x` | an object with class glmGamPoi
`...` | not used

### Value

The method returns a list with the following elements:

`Beta`

  a matrix with dimensions `nrow(data) x n_coefficients` where `n_coefficients` is based on the `design` argument. It contains the estimated coefficients for each gene.

`overdispersions`

  a vector with length `nrow(data)`. The overdispersion parameter for each gene. It describes how much more the counts vary than one would expect according to the Poisson model.

`Mu`

  a matrix with the same dimensions as `dim(data)`. If the calculation happened on disk, than `Mu` is a `HDF5Matrix`. It contains the estimated mean value for each gene and sample.

`size_factors`

  a vector with length `ncol(data)`. The size factors are the inferred correction factors for different sizes of each sample. They are also sometimes called the exposure factor.

`model_matrix`

  a matrix with dimensions `ncol(data) x n_coefficients`. It is build based on the `design` argument.

[Package glmGamPoi version 1.2.0 Index]