geom_stats {ggcyto} | R Documentation

## Add a popluation statistics layer to a ggcyto plot.

### Description

This is a virtual layer and will be instanatiated as geom_label layer within ggycto.+ operator.

### Usage

    geom_stats(
      gate = NULL,
      ...,
      value = NULL,
      type = "percent",
      negated = FALSE,
      adjust = 0.5,
      label.padding = unit(0.05, "lines"),
      label.size = 0,
      digits = 3
    )

### Arguments

`gate` | a 'filterList' or character (represent as a population node in GatingSet) if not supplied, ggcyto then tries to parse the gate from the first geom_gate layer.
`...` | other arguments passed to geom_label layer
`value` | the pre-calculated stats value. when supplied, the stats computing is skipped.
`type` | a vector of strings to specify the stats types. can be any or multiple values of "percent", "count", "gate_name", or "MFI" (MFI is currently not supported yet).
`negated` | whether the gate needs to be negated
`adjust` | adjust the position of the centroid. from 0 to 1.
`label.padding, label.size` | arguments passed to geom_label layer
`digits` | control the stats format

### Details

So it is dedicated for ggcyto context and thus cannot be added to ggplot object directly.

### Value

a geom_popStats layer

### Examples

    dataDir <- system.file("extdata",package="flowWorkspaceData")
    gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE))
    p <- ggcyto(gs, aes(x = CD4, y = CD8), subset = "CD3+") + geom_hex(bins = 64)
    p
    # add gate and stats layer
    p + geom_gate("CD4") + geom_stats()

    # display gate name
    p + geom_gate(c("CD4", "CD8")) + geom_stats(type = "gate_name")
    # display gate name and percent
    p + geom_gate(c("CD4", "CD8")) + geom_stats(type = c("gate_name", "percent"))

[Package ggcyto version 1.18.0 Index]