directPlot {gQTLstats} | R Documentation

## visualize relationship between empirical and modeled FDR based on analysis of a gQTL store

### Description

visualize relationship between empirical and modeled FDR based on analysis of a gQTL store

### Usage

    directPlot(FDRsupp)

### Arguments

`FDRsupp` | instance of `FDRsupp-class`

### Details

This plot is used to show the degree of fit between a smooth model relating modeled FDR to empirical FDR, and the empirical FDR themselves. It should be used in conjunction with `txsPlot`.

It is possible for an implausible squiggly model to yield perfect agreement for all empirical FDR estimates. See the example.

### Examples

    data(filtFDR)
    directPlot(filtFDR)

[Package gQTLstats version 1.21.3 Index]