fmcsR-package {fmcsR} | R Documentation

## A FMCS solver package.

### Description

The package consists of two main functions, `fmcs` which computes the flexible MCS between two `SDF` objects. And `fmcsBatch` runs the FMCS algorithm on a `SDFset`.

### Details

Package: | fmcsR
Type: | Package
Version: | 1.0
Date: | 2012-02-01

### Author(s)

Yan Wang

Maintainer: Yan Wang <wangya@cs.ucr.edu>

### Examples

    library(fmcsR)
    data(sdfsample)
    sdfset <- sdfsample
    result1 <- fmcs(sdfset[[1]], sdfset[[2]])
    result2 <- fmcs(sdfset[[1]], sdfset[[2]], au=3)
    result3 <- fmcs(sdfset[[1]], sdfset[[2]], bu=3)
    result4 <- fmcs(sdfset[[1]], sdfset[[2]], au=1, bu=1)
    result5 <- fmcs(sdfset[[1]], sdfset[[2]], matching.mode="aromatic")
    result6 <- fmcs(sdfset[[1]], sdfset[[2]], au=2, bu=1, matching.mode="aromatic")

    fmcsBatch(sdfset[[1]], sdfset[1:3])
    fmcsBatch(sdfset[[1]], sdfset[1:3], au=2)
    fmcsBatch(sdfset[[1]], sdfset[1:3], bu=1)
    fmcsBatch(sdfset[[1]], sdfset[1:3], matching.mode="aromatic", au=1, bu=1)

[Package fmcsR version 1.32.0 Index]