runDiff {flowSpy} | R Documentation

## Calculate differential expression markers

### Description

Calculating differentially expressed markers

### Usage

    runDiff(object, branch.id = NULL, branch.id.2 = NULL, verbose = FALSE)

### Arguments

`object` | an FSPY object
`branch.id` | vector. Branch ids use to run differentially expressed markers
`branch.id.2` | vector. Branch ids use to run differentially expressed markers in compare with branch.id
`verbose` | logic. Whether to print calculation progress.

### Value

An FSPY object with cluster.id in meta.data

a data.frame with differential expressed markers

### See Also

`bulidTree`

### Examples

    if (FALSE) {

    DEG.table <- runDiff(fspy)

    }

[Package flowSpy version 1.4.0 Index]