defRootCells {flowSpy} | R Documentation

## definition of root cells

### Description

definition of root cells

### Usage

    defRootCells(object, root.cells = NULL, verbose = FALSE)

### Arguments

`object` | an FSPY object
`root.cells` | vector. Cell name of the root cells
`verbose` | logical. Whether to print calculation progress.

### Value

An FSPY object

### Examples

    if (FALSE) {
    # Define root cells by cluster
    fspy <- defRootCells(fspy, root.cells = 6, verbose = TRUE)
    fspy <- defRootCells(fspy, root.cells = c(6,8), verbose = TRUE)

    # Define root cells by cell names
    cells <- test.meta.data$cell[which(test.meta.data$stage == "D0")]
    cells <- as.character(cells)
    fspy <- defRootCells(fspy, root.cells = cells, verbose = TRUE)
    }

[Package flowSpy version 1.4.0 Index]