plotTrajHeatmap {flowSpy} | R Documentation

## Visualization heatmap of intermediate cells of FSPY

### Description

Visualization heatmap of intermediate cells of FSPY

### Usage

    plotTrajHeatmap(
      object,
      cutoff = 0,
      markers = NULL,
      color = colorRampPalette(c("blue", "white", "red"))(100),
      scale = "row",
      ...
    )

### Arguments

`object` | An FSPY object
`cutoff` | numeric. value to identify intermediate state cells
`markers` | markers to plot on the heatmap
`color` | vector. Colors used in heatmap.
`scale` | character. Whether the values should be centered and scaled in either the row direction or the column direction, or none. Corresponding values are "row", "column" and "none"
`...` | options to pass on to the `pheatmap` function.

### Value

ggplot2 figure

### Examples

    if (FALSE) {

    plotTrajHeatmap(fspy)
    plotBranchHeatmap(fspy, color = colorRampPalette(c("purple","white","yellow"))(100))
    plotBranchHeatmap(fspy, cluster_row = FALSE)
    plotBranchHeatmap(fspy, cluster_row = FALSE, cluster_col = FALSE)

    }

[Package flowSpy version 1.4.0 Index]