makeSimSwishData {fishpond} | R Documentation

## Make simulated data for swish for examples/testing

### Description

Makes a small swish dataset for examples and testing. The first six genes have some differential expression evidence in the counts, with varying degree of inferential variance across inferential replicates (1-2: minor, 3-4: some, 5-6: substantial). The 7th and 8th genes have all zeros to demonstrate `labelKeep`.

### Usage

    makeSimSwishData(
      m = 1000,
      n = 10,
      numReps = 20,
      null = FALSE,
      meanVariance = FALSE
    )

### Arguments

`m` | number of genes
`n` | number of samples
`numReps` | how many inferential replicates to generate
`null` | logical, whether to make an all null dataset
`meanVariance` | logical, whether to output only mean and variance of inferential replicates

### Value

a SummarizedExperiment

### Examples

    library(SummarizedExperiment)
    y <- makeSimSwishData()
    assayNames(y)

[Package fishpond version 1.6.0 Index]