computeInfRV {fishpond} | R Documentation

## Compute inferential relative variance (InfRV)

### Description

`InfRV` is used the Swish publication for visualization. This function provides computation of the mean InfRV, a simple statistic that measures inferential uncertainty. Note that InfRV is not used in the `swish` statistical method at all, it is just for visualization. See function code for details.

### Usage

    computeInfRV(y, pc = 5, shift = 0.01, meanVariance)

### Arguments

`y` | a SummarizedExperiment
`pc` | a pseudocount parameter for the denominator
`shift` | a final shift parameter
`meanVariance` | logical, use pre-computed inferential mean and variance assays instead of `counts` and computed variance from `infReps`. If missing, will use pre-computed mean and variance when present.

### Value

a SummarizedExperiment with `meanInfRV` in the metadata columns

[Package fishpond version 1.6.0 Index]