# dPeak (Deconvolution of Peaks in ChIP-seq Analysis)

## Documentation for package ‘dpeak’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

dpeak-package | dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
dpeak | dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
DpeakData-class | Class "DpeakData"
dpeakFit | Fit dPeak model
DpeakFit-class | Class "DpeakFit"
dpeakFit-method | Fit dPeak model
dpeakMotif | Implement de novo motif analysis based on the peak list
DpeakMotif-class | Class "DpeakMotif"
dpeakRead | Import peak list and aligned read files
exampleData | E. coli ChIP-seq Dataset
exportPeakList | Export deconvolution results to text files
exportPeakList-method | Export deconvolution results to text files
exportPlot | Export plots to pdf files.
exportPlot-method | Class "DpeakData"
exportPlot-method | Class "DpeakFit"
printEmpty | Return the peak regions without any reads.
printEmpty-method | Return the peak regions without any reads.
show-method | Class "DpeakData"
show-method | Class "DpeakFit"
show-method | Class "DpeakMotif"