Package: dpeak
Type: Package
Title: dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
Version: 1.2.0
Depends: R (>= 4.0.0), methods, stats, utils, graphics, Rcpp
Imports: MASS, IRanges, BSgenome, grDevices, parallel
Suggests: BSgenome.Ecoli.NCBI.20080805
LinkingTo: Rcpp
SystemRequirements: GNU make, meme, fimo
Date: 2020-02-25
Author: Dongjun Chung, Carter Allen
Maintainer: Dongjun Chung <dongjun.chung@gmail.com>
Description: dPeak is a statistical framework for the high resolution identification of protein-DNA interaction sites using PET and SET ChIP-Seq and ChIP-exo data. It provides computationally efficient and user friendly interface to process ChIP-seq and ChIP-exo data, implement exploratory analysis, fit dPeak model, and export list of predicted binding sites for downstream analysis.
License: GPL (>= 2)
LazyData: FALSE
NeedsCompilation: yes
biocViews: ChIPSeq, Genetics, Sequencing, Software, Transcription
BugReports: https://github.com/dongjunchung/dpeak/issues
git_url: https://git.bioconductor.org/packages/dpeak
git_branch: RELEASE_3_12
git_last_commit: bd5fad4
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
Packaged: 2020-10-28 01:27:07 UTC; biocbuild
Built: R 4.0.3; i386-w64-mingw32; 2020-10-28 14:05:29 UTC; windows
Archs: i386, x64
