setBulk {dittoSeq} | R Documentation

## Set whether a SingleCellExperiment object should be treated as bulk versus single-cell by dittoSeq

### Description

Set whether a SingleCellExperiment object should be treated as bulk versus single-cell by dittoSeq

### Usage

    setBulk(object, set = TRUE)

    ## S4 method for signature 'SingleCellExperiment'
    setBulk(object, set = TRUE)

### Arguments

`object` | A target SingleCellExperiment object
`set` | Logical, whether the object should be considered as bulk (TRUE) or not (FALSE)

### Value

A `SingleCellExperiment` object with "bulk" internal metadata set to `set`

### Examples

    example(importDittoBulk, echo = FALSE)
    myRNA

    isBulk(myRNA)

    scRNA <- setBulk(myRNA, FALSE)
    isBulk(scRNA)

    # Now, if we make a heatmap with this data, we will see that single-cell
    # defaults (ordering by the first 'annot.by' & cell names not shown) are used.
    dittoHeatmap(scRNA, getGenes(scRNA)[1:30],
        annot.by = c("clustering", "groups"),
        main = "isBulk(object) == FALSE")

[Package dittoSeq version 1.2.6 Index]