fffdfc02df20885cc94302b72a27ad0d *DESCRIPTION
d7dd42afa6971158a0bad855c734b8fd *INDEX
1653fc3664110e43c663045e6498c973 *LICENSE
4d555c677772727a2a141e59fbfcd80b *Meta/Rd.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
f5949f8793b4f85042ce907d7c62ae36 *Meta/hsearch.rds
35af5f293047a0d1fcd0d96adc20bc64 *Meta/links.rds
270dec2952f864487de914004a74f403 *Meta/nsInfo.rds
3df03ae6eb8a8cceb29d5c71739b0de2 *Meta/package.rds
23f4e8a36d41948e4074448d20c81263 *Meta/vignette.rds
52b21df8aad348daced3ef4ec1acc057 *NAMESPACE
51a5a36e746bec256ba0b5f032bc47d6 *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/diffloop
79b2afece0e855dbbd28dd32e6359907 *R/diffloop.rdb
b7690839ebec7620c70a6701aa8cdfa4 *R/diffloop.rdx
83f42f3f8594a2228a04374eaa31ca1e *doc/diffloop.R
2e0bff835a901ee4a580544f2d2e5fb4 *doc/diffloop.Rmd
6ce960f88cc1dfcc393ed4b135ade87a *doc/diffloop.html
ece60c36e19aedb88620f62b22319b8b *doc/index.html
1c11ae01a05c606208638891bc41f31d *extdata/Jurkat_CTCF_chr1.narrowPeak
7737a1fb81a379fc22eaa0a3c6f3fb1c *extdata/Jurkat_H3K27ac_chr1.narrowPeak
35984534f4283ff3a1a01354509180db *extdata/chr1-TSS.bed
c2fd58e244061432c331cedc6b601c0c *help/AnIndex
5b7032b082d5dcb7fabf90cc763a89c0 *help/aliases.rds
49808cd994da444d6e8e8887908fdd06 *help/diffloop.rdb
01cfd45b11dd9b6841f98e28623d0754 *help/diffloop.rdx
1864d75593c83351eb00c643463ff0b0 *help/paths.rds
0a948bd84c678563750ec03eb470e7bf *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
2bedc4a7130192f4701dc5d0552b9a91 *html/addchr.html
be51de0bc4ddb3c8affaf36e7c14a62c *html/annotateAnchors.bed.html
3592eee22994cde68c712fdd7164f805 *html/annotateAnchors.bigwig.html
1ea8fe591c4860bdbc1c479e3fafe057 *html/annotateAnchors.html
acd8b1c26fa7e1623a7ad7219b964873 *html/annotateLoops.dge.html
660ca900946477d7e050994bdd384622 *html/annotateLoops.html
4d8c3226c59c622874dd7d90ffef5783 *html/bedToGRanges.html
888659b4d52b96c6d65a8aae9eb915c2 *html/calcLDSizeFactors.html
2c7c38f52678107ae8e52acfca46ef48 *html/callCCDs.html
4c56b932ac591e2b22dd7b6b0cddfde2 *html/computeBoundaryScores.html
760aa8a289607a53974a9f4c282973f2 *html/diffloop.html
941189be662474c9dc222fc357743aba *html/dim-loops-method.html
e621777390c2facfef8906b7e6b6fe3e *html/featureTest.html
46cd89207b0f03b32980214d1cae687c *html/filterLoops.html
988ba6538b351cfddf91b823e1a63bc7 *html/filterSpanningLoops.html
dd75eb40d7d8aa2ea6ebb9d3fbb62149 *html/geneinfo.html
84ddb539fdd803eb8e64af95ed679ae1 *html/getHumanGenes.html
db93e967ad9ddd891dbdcb0afe20111a *html/getHumanTSS.html
5f4876d9b5bb2daac8cf1cdebb0cc84d *html/getMouseGenes.html
58a2cadc54a68d29ae104c966f2471bf *html/getMouseTSS.html
54c2742deaa1e76964da1e0af9dbc244 *html/head-loops-method.html
9f0ea233a777cf42421bd8aa708c16d8 *html/human.genes.html
764c73a7a5c1cc65ca16c3551d7e0ff9 *html/interchromosomal.html
df49da860088798a4ead8e96f94b4f5c *html/intrachromosomal.html
55ab3468233049a094ea2d8fe56db3d4 *html/keepCTCFloops.html
327136ee05ca692e5cb36cd8c4a13dd4 *html/keepEPloops.html
ee61966a4772ef00005a43953204dbad *html/loopAssoc.html
941acd2165bc62c11c6ca32a9d61d765 *html/loopDistancePlot.html
92138569b253c0c9656578367f345ba5 *html/loopGenes.html
504f87a767dd10b4c79200a7c378b121 *html/loopMetrics.html
6fa290cfbb804b5b21c8a3a950323f2a *html/loopPlot.html
0a17ebeeca81e77702f6415219f5b063 *html/loopWidth.html
825d9b7ed5e49e0ecc14811ec887a100 *html/loops-class.html
f44f5da2a35f6e175b5461e7491141ed *html/loops.small.html
9d70bb3a221ec637cb5716f456876552 *html/loopsMake.html
d02d7679214e33c7ea5627697a338a35 *html/loopsMake.mango.html
681fad294b283deaf3e772033f27257c *html/loopsSubset.html
77fbc7b57774382ed1677598749b7423 *html/mangoCorrection.html
f40c6ef02333144c61a4d3e292e8ace6 *html/manyLoopPlots.html
b1943b38702d5bda9fbde36d24d4c35c *html/mergeAnchors.html
8013a1fd94ad8cd541af6e69e8227933 *html/numAnchors.html
3c273dc5ef4c7d2491db3b0754841857 *html/numLoops.html
e8d518e07dddcdc52f23df64a4aa9203 *html/padGRanges.html
32abe66ec55978c9835b121e63c55f9d *html/pcaPlot.html
2b6989e16f2460c0e2287232fd0e826b *html/plotTopLoops.html
958d53b62141afbb215405713829c571 *html/quickAssoc.html
0483e523ecb55595f884456322aa8a3a *html/quickAssocVoom.html
754dde08fb32457b3803dd8ce6d6bb9d *html/removeRegion.html
8abfc7b51a888b83ffc1af160cf2f29c *html/removeSelfLoops.html
ce3bd4fe3d55529057d4b4e35f5f7ad1 *html/rmchr.html
e9fc4f1a7e64ea003e12366e8b2d083c *html/sampleNames-loops-method.html
9ece44f9a26c6f5f8789a0e352810106 *html/slidingWindowTest.html
386d6de175f16c8e47addb740040d776 *html/splitSamples.html
560bcfe15ab1b357789946cb3d0b17f3 *html/sub-loops-numeric-numeric-missing-method.html
aeb78cffb500405cce91f4d597ff442a *html/subsetLoops.html
1c52e24d5bad8e969d17926a6666d568 *html/subsetRegion.html
824a472aeb9891ba8cbd19acbafe2cf5 *html/subsetRegionAB.html
aed4c36e4d183e206c9cdf94076146c3 *html/summary-loops-method.html
7479e5966522e8eb9f03f8c05cba5995 *html/tail-loops-method.html
9a2dd45d64527d9d01fc3b82c70e90b6 *html/topLoops.html
927296434cd2305b5483185db6dbd663 *html/union-loops-loops-method.html
3fd4cd9042844cec7414199471a6d227 *html/updateLDGroups.html
6370ea6d3fc8c60dbcf64eafd772adb6 *rda/geneinfo.h.rda
4b562a7016e48faaf91beeb7b58cb69a *rda/geneinfo.m.rda
33463d38feec70a2fc5af7278e04d08f *rda/human.genes.rda
b9f6ff4264da38f328006f920d4c40b3 *rda/loops.small.rda
