97d1cb27e8478d7ae4de59a2de8c86e7 *CITATION
7d5acfa876ddbedc31e56de1a5c997d1 *DESCRIPTION
82aad66b16517c9991aa8cae64982337 *INDEX
1c1a3f30dca8404e4ba8d73cd1fbe2ed *Meta/Rd.rds
778e4c9ce8c6fd4a3f6325356d0ebf27 *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
b42a8cfd3539b2d50108bcc23d6fb88d *Meta/hsearch.rds
4ba58a7921aa4c65189ea6261b5ae848 *Meta/links.rds
e9915a2fb17047e555a3b54e26de5989 *Meta/nsInfo.rds
ca9e9702284b4d93531f68a7647f6c75 *Meta/package.rds
dd689dbbd3f9143efe91d3e083cbf1d8 *Meta/vignette.rds
e096c80e50b90520bbd9b8ac19805a4c *NAMESPACE
8ada7993428fbe4013f2164a0f29f319 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/deepSNV
fd44603dac27e97f18007e873ab59f63 *R/deepSNV.rdb
fdb8942d8e38200f55eee7f9006d634f *R/deepSNV.rdx
eb93e43e868cf6b00523766e2093961c *TODO
3ccecc236923abcec5bf3979f95058ec *data/HIVmix.RData
e5e59d311d41716d436bda6c12d6b6f8 *data/RCC.RData
44fe941582b98ed2fb74a2ff43bd04dc *data/counts.RData
8f473e99da6aea7893fbf4f0967161a5 *data/phiX.RData
39946182d2a7087db51be00e27bfe68e *data/pi.RData
a198b59b439c25594d85e0f8c8afc300 *data/trueSNVs.RData
b668e30fc1bc1b8c1f60ad1dbaff8772 *doc/deepSNV.R
79ea907278cca8011a87b7954bfc02ce *doc/deepSNV.Rnw
1b7c6d9a3dde70237d63a0f13cea7694 *doc/deepSNV.pdf
db14767c6110ae0364ac7e64e94d5518 *doc/index.html
92e9aece07ac3612437ffc3be5c5823f *doc/shearwater.R
fc4e56aed626edbec5e35a7c0ac725b0 *doc/shearwater.Rnw
8b8bf08f1b505f7111c5aa715578f8cd *doc/shearwater.pdf
b17ebdace526e32bc2eaa51e7361ade4 *doc/shearwaterML.R
866271256074ead132c1e1225b663bac *doc/shearwaterML.Rmd
c4ad3a596a4827ab2e152337609062b1 *doc/shearwaterML.html
03adcf464008b8e2642cdb62807764d3 *example/deepSNV-example.R
f3dd841413d42161102b4b371b8b8e8f *example/shearwater-example.R
62e3352bca95588f9d1478ae36f1ed83 *extdata/control.bam
a3507164d703e922651e0e56236bc293 *extdata/control.bam.bai
89aadac87ae16155e52a1d89289428ae *extdata/deepSNV.vcf
965814f871f749638f925cc6f77d2a38 *extdata/shearwater.vcf
42fb5eb22aef228e8ed4b84294131350 *extdata/shearwater2.vcf
f739c8d70ed095483959c826f2cc3f53 *extdata/shearwaterML.vcf
6af3a3077f6d4ab936e1bb777ad8e910 *extdata/test.bam
74ceb014e38fe7f5111bc9d501889a5e *extdata/test.bam.bai
2df1a587bda6e4c60cc283dfd468cbaa *help/AnIndex
8f66cabcb0ddc6c857ee5a1721d43f40 *help/aliases.rds
94449fb4d9f2f20ede9e28d21d0922a6 *help/deepSNV.rdb
a74211dc16a04f6654f32ae1c9e22c10 *help/deepSNV.rdx
e680abe55b3bff7868e40ccac1fff6eb *help/paths.rds
96c64ef11b94f3a1bb548c99dd0b7d66 *html/00Index.html
125621104c3d165078a6ddca6e2cff60 *html/Extract-methods.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
dde3fd15cbebebd57e3f7f17d199ad78 *html/RCC.html
26350dd95d77f9ac20b1b33e154a5a41 *html/RF.html
c21a88052aa5f4e4f2ea57ef8ab5cc69 *html/bam2R.html
4f9faebe47162bca62732bad937277f5 *html/betabinLRT.html
8676a8bd72c8cb3537a05467faf9df7c *html/bf2Vcf.html
69307cc053d6849d09c44ab1fa4db218 *html/consensusSequence-methods.html
cd39af68fe310a1348fdbd692eaea4bc *html/control-methods.html
8caa41119457786d056f40c33840f6de *html/coordinates-methods.html
b1ebac9cf7ba234bba83740a484d2a3e *html/counts.html
de74ac584ba59f725217268cced83c40 *html/dbetabinom.html
59c2efebf2cb2bcdf80136050f2a72f8 *html/deepSNV-class.html
a9e4a6396666cf22dd7a5dde1bbbd798 *html/deepSNV-methods.html
65e213c218737a182251b59d62d1a8f3 *html/deepSNV-package.html
016ee22347d9b87cf2498e18b202cb80 *html/estimateDirichlet-methods.html
e0282e086480ece572c5794df4a64883 *html/estimateDispersion-methods.html
0b35b00429c198daf656fc60ec561212 *html/estimateRho.html
86714e9a0999dcd712244533eb2da5fe *html/loadAllData.html
ad82af9a2d6eb1c57a9baaa1525d3bf7 *html/makePrior.html
986524e3f047c5d13b6fc134a9fd9f2e *html/manhattanPlot.html
5b9b0a3f39458d102638fd74e85650b9 *html/mcChunk.html
340911325fe45c02f1c1a198dfb290f1 *html/normalize-methods.html
c4ede6f1020f26aecb7c1bae4f03e1e9 *html/p.combine.html
79898ff17ac05ab4a634936c3a35ee97 *html/p.val-methods.html
e3dd9cc9233ce91243649961c0a86367 *html/pbetabinom.html
96bd9151aa3dec4bc4839273a216a390 *html/phiX.html
dab1770434e880223aba8ad5305ab9fc *html/pi.html
8b1efc8d22d9fb049f09a7c114a78396 *html/plot.deepSNV.html
985e7dac322ad0d6908691e4cb5716a9 *html/qvals2Vcf.html
f15c82165d99e8fc18b849db345dc7d6 *html/repeatMask-methods.html
649f730accbc4ad558a24e16f1a92797 *html/shearwater.html
cbc8981bebd3a3dbc6636fd266f257f6 *html/show-deepSNV-method.html
238f42cae3ca172a57a61f21ecd4de0b *html/summary-methods.html
08dacf5deb397a21ddba35c2105ae69a *html/test-methods.html
306fd746ce6836224ef5054d51d71013 *html/trueSNVs.html
16fd5922544fda9d7b85c1a32dc673d3 *libs/i386/deepSNV.dll
08d0c8fc6e19bf7d5b8304dca336cc29 *libs/x64/deepSNV.dll
