derep-class {dada2} | R Documentation

## A class representing dereplicated sequences

### Description

A `list` with the following three members.

- $uniques: Named integer vector. Named by the unique sequence, valued by abundance.

- $quals: Numeric matrix of average quality scores by position for each unique. Uniques are rows, positions are cols.

- $map: Integer vector of length the number of reads, and value the index (in $uniques) of the unique to which that read was assigned.

This can be created from a FastQ sequence file using `derepFastq`

### See Also

`derepFastq`

[Package dada2 version 1.18.0 Index]