open_raw_illum {crossmeta} | R Documentation

## Open raw Illumina microarray files.

### Description

Helper function to open raw Illumina microarray files in order to check that they are formatted correctly. For details on correct format, please see 'Checking Raw Illumina Data' in vignette.

### Usage

    open_raw_illum(gse_names, data_dir = getwd())

### Arguments

`gse_names` | Character vector of Illumina GSE names to open.
`data_dir` | String specifying directory with GSE folders.

### Value

Character vector of successfully formated Illumina GSE names.

### Examples

    library(lydata)

    # Illumina GSE names
    illum_names <- c("GSE50841", "GSE34817", "GSE29689")

    # location of raw data
    data_dir <- system.file("extdata", package = "lydata")

    # open raw data files with default text editor
    # open_raw_illum(illum_names)

[Package crossmeta version 1.16.1 Index]