StrandStateMatrix-class {contiBAIT} | R Documentation

## A class for storing a data frame of discrete strand states of a set of contigs over several libraries

### Description

The strand information stored in this object is a call of the strand state of each contig in each library. mapping to each contig in each library (cell). This should fall within the range (-1,1). This class simply extends matrix, but with additional validity checking.

### Usage

    StrandStateMatrix(states = matrix(integer()))

### Arguments

`states` | an integer matrix of strand states by library

### Value

a `StrandStateMatrix`

### Examples

    StrandStateMatrix(matrix(ncol=2, c(1,3,1,2)))

[Package contiBAIT version 1.18.0 Index]