get_signatures-HierarchicalPartition-method {cola} | R Documentation

## Get signatures rows

### Description

Get signatures rows

### Usage

    ## S4 method for signature 'HierarchicalPartition'
    get_signatures(object, depth = max_depth(object),
        scale_rows = object[1]@scale_rows,
        anno = get_anno(object),
        anno_col = get_anno_col(object),
        show_column_names = FALSE,
        verbose = TRUE, plot = TRUE,
        ...)

### Arguments

`object` | a `HierarchicalPartition-class` object.
`depth` | depth of the hierarchy.
`scale_rows` | whether apply row scaling when making the heatmap.
`anno` | a data frame of annotations for the original matrix columns. By default it uses the annotations specified in `hierarchical_partition`.
`anno_col` | a list of colors (color is defined as a named vector) for the annotations. If `anno` is a data frame, `anno_col` should be a named list where names correspond to the column names in `anno`.
`show_column_names` | whether show column names in the heatmap.
`verbose` | whether to print messages.
`plot` | whether to make the plot.
`...` | other arguments pass to `get_signatures,ConsensusPartition-method`.

### Details

The function calls `get_signatures,ConsensusPartition-method` to find signatures at each node of the partition hierarchy.

### Value

A list of row indices where rows are significantly different between subgroups in at least one node.

### Author(s)

Zuguang Gu <z.gu@dkfz.de>

### Examples

    # There is no example
    NULL

[Package cola version 1.6.0 Index]