compare_signatures-HierarchicalPartition-method {cola} | R Documentation

## Compare Signatures from Different Nodes

### Description

Compare Signatures from Different Nodes

### Usage

    ## S4 method for signature 'HierarchicalPartition'
    compare_signatures(object, depth = max_depth(object),
        method = c("euler", "upset"), verbose = interactive(), ...)

### Arguments

`object` | A `HierarchicalPartition-class` object.
`depth` | Depth of the hierarchy.
`method` | Method to visualize.
`verbose` | Whether to print message.
`...` | Other arguments passed to `get_signatures,HierarchicalPartition-method`.

### Details

It plots an Euler diagram or a UpSet plot showing the overlap of signatures from different nodes. On each node, the number of subgroups is inferred by `suggest_best_k,ConsensusPartition-method`.

### Examples

    data(golub_cola_rh)
    compare_signatures(golub_cola_rh)

[Package cola version 1.6.0 Index]