adjust_matrix	adjust_matrix
adjust_outlier	adjust_outlier
all_leaves	all_leaves-HierarchicalPartition-method
all_leaves,HierarchicalPartition-method	all_leaves-HierarchicalPartition-method
all_nodes	all_nodes-HierarchicalPartition-method
all_nodes,HierarchicalPartition-method	all_nodes-HierarchicalPartition-method
all_partition_methods	all_partition_methods
all_top_value_methods	all_top_value_methods
aPAC	aPAC
ATC	ATC
cola	cola
cola_opt	cola_opt
cola_report	cola_report-dispatch
cola_report,ConsensusPartition-method	cola_report-ConsensusPartition-method
cola_report,ConsensusPartitionList-method	cola_report-ConsensusPartitionList-method
cola_report,HierarchicalPartition-method	cola_report-HierarchicalPartition-method
cola_rl	cola_rl
collect_classes	collect_classes-dispatch
collect_classes,ConsensusPartition-method	collect_classes-ConsensusPartition-method
collect_classes,ConsensusPartitionList-method	collect_classes-ConsensusPartitionList-method
collect_classes,HierarchicalPartition-method	collect_classes-HierarchicalPartition-method
collect_plots	collect_plots-dispatch
collect_plots,ConsensusPartition-method	collect_plots-ConsensusPartition-method
collect_plots,ConsensusPartitionList-method	collect_plots-ConsensusPartitionList-method
collect_stats	collect_stats-dispatch
collect_stats,ConsensusPartition-method	collect_stats-ConsensusPartition-method
collect_stats,ConsensusPartitionList-method	collect_stats-ConsensusPartitionList-method
colnames	colnames-dispatch
colnames,ConsensusPartition-method	colnames-ConsensusPartition-method
colnames,ConsensusPartitionList-method	colnames-ConsensusPartitionList-method
colnames,DownSamplingConsensusPartition-method	colnames-DownSamplingConsensusPartition-method
colnames,HierarchicalPartition-method	colnames-HierarchicalPartition-method
compare_signatures	compare_signatures-dispatch
compare_signatures,ConsensusPartition-method	compare_signatures-ConsensusPartition-method
compare_signatures,HierarchicalPartition-method	compare_signatures-HierarchicalPartition-method
concordance	concordance
ConsensusPartition	ConsensusPartition-class
ConsensusPartition-class	ConsensusPartition-class
ConsensusPartitionList	ConsensusPartitionList-class
ConsensusPartitionList-class	ConsensusPartitionList-class
consensus_heatmap	consensus_heatmap-ConsensusPartition-method
consensus_heatmap,ConsensusPartition-method	consensus_heatmap-ConsensusPartition-method
consensus_partition	consensus_partition
consensus_partition_by_down_sampling	consensus_partition_by_down_sampling
correspond_between_rankings	correspond_between_rankings
correspond_between_two_rankings	correspond_between_two_rankings
david_enrichment	david_enrichment
dim.ConsensusPartition	dim.ConsensusPartition
dim.ConsensusPartitionList	dim.ConsensusPartitionList
dim.DownSamplingConsensusPartition	dim.DownSamplingConsensusPartition
dim.HierarchicalPartition	dim.HierarchicalPartition
dimension_reduction	dimension_reduction-dispatch
dimension_reduction,ConsensusPartition-method	dimension_reduction-ConsensusPartition-method
dimension_reduction,DownSamplingConsensusPartition-method	dimension_reduction-DownSamplingConsensusPartition-method
dimension_reduction,HierarchicalPartition-method	dimension_reduction-HierarchicalPartition-method
dimension_reduction,matrix-method	dimension_reduction-matrix-method
DownSamplingConsensusPartition	DownSamplingConsensusPartition-class
DownSamplingConsensusPartition-class	DownSamplingConsensusPartition-class
Extract.ConsensusPartitionList	Extract.ConsensusPartitionList
Extract.HierarchicalPartition	Extract.HierarchicalPartition
ExtractExtract.ConsensusPartitionList	ExtractExtract.ConsensusPartitionList
ExtractExtract.HierarchicalPartition	ExtractExtract.HierarchicalPartition
FCC	FCC
find_best_km	find_best_km
functional_enrichment	functional_enrichment-dispatch
functional_enrichment,ANY-method	functional_enrichment-ANY-method
functional_enrichment,ConsensusPartition-method	functional_enrichment-ConsensusPartition-method
functional_enrichment,ConsensusPartitionList-method	functional_enrichment-ConsensusPartitionList-method
get_anno	get_anno-dispatch
get_anno,ConsensusPartition-method	get_anno-ConsensusPartition-method
get_anno,ConsensusPartitionList-method	get_anno-ConsensusPartitionList-method
get_anno,DownSamplingConsensusPartition-method	get_anno-DownSamplingConsensusPartition-method
get_anno,HierarchicalPartition-method	get_anno-HierarchicalPartition-method
get_anno_col	get_anno_col-dispatch
get_anno_col,ConsensusPartition-method	get_anno_col-ConsensusPartition-method
get_anno_col,ConsensusPartitionList-method	get_anno_col-ConsensusPartitionList-method
get_anno_col,HierarchicalPartition-method	get_anno_col-HierarchicalPartition-method
get_classes	get_classes-dispatch
get_classes,ConsensusPartition-method	get_classes-ConsensusPartition-method
get_classes,ConsensusPartitionList-method	get_classes-ConsensusPartitionList-method
get_classes,DownSamplingConsensusPartition-method	get_classes-DownSamplingConsensusPartition-method
get_classes,HierarchicalPartition-method	get_classes-HierarchicalPartition-method
get_consensus	get_consensus-ConsensusPartition-method
get_consensus,ConsensusPartition-method	get_consensus-ConsensusPartition-method
get_matrix	get_matrix-dispatch
get_matrix,ConsensusPartition-method	get_matrix-ConsensusPartition-method
get_matrix,ConsensusPartitionList-method	get_matrix-ConsensusPartitionList-method
get_matrix,HierarchicalPartition-method	get_matrix-HierarchicalPartition-method
get_membership	get_membership-dispatch
get_membership,ConsensusPartition-method	get_membership-ConsensusPartition-method
get_membership,ConsensusPartitionList-method	get_membership-ConsensusPartitionList-method
get_param	get_param-ConsensusPartition-method
get_param,ConsensusPartition-method	get_param-ConsensusPartition-method
get_signatures	get_signatures-dispatch
get_signatures,ConsensusPartition-method	get_signatures-ConsensusPartition-method
get_signatures,DownSamplingConsensusPartition-method	get_signatures-DownSamplingConsensusPartition-method
get_signatures,HierarchicalPartition-method	get_signatures-HierarchicalPartition-method
get_stats	get_stats-dispatch
get_stats,ConsensusPartition-method	get_stats-ConsensusPartition-method
get_stats,ConsensusPartitionList-method	get_stats-ConsensusPartitionList-method
golub_cola	golub_cola
golub_cola_ds	golub_cola_ds
golub_cola_rh	golub_cola_rh
HierarchicalPartition	HierarchicalPartition-class
HierarchicalPartition-class	HierarchicalPartition-class
hierarchical_partition	hierarchical_partition
is_best_k	is_best_k-dispatch
is_best_k,ConsensusPartition-method	is_best_k-ConsensusPartition-method
is_best_k,ConsensusPartitionList-method	is_best_k-ConsensusPartitionList-method
is_stable_k	is_stable_k-dispatch
is_stable_k,ConsensusPartition-method	is_stable_k-ConsensusPartition-method
is_stable_k,ConsensusPartitionList-method	is_stable_k-ConsensusPartitionList-method
knitr_add_tab_item	knitr_add_tab_item
knitr_insert_tabs	knitr_insert_tabs
map_to_entrez_id	map_to_entrez_id
max_depth	max_depth-HierarchicalPartition-method
max_depth,HierarchicalPartition-method	max_depth-HierarchicalPartition-method
membership_heatmap	membership_heatmap-ConsensusPartition-method
membership_heatmap,ConsensusPartition-method	membership_heatmap-ConsensusPartition-method
ncol	ncol-dispatch
ncol,ConsensusPartition-method	ncol-ConsensusPartition-method
ncol,ConsensusPartitionList-method	ncol-ConsensusPartitionList-method
ncol,DownSamplingConsensusPartition-method	ncol-DownSamplingConsensusPartition-method
ncol,HierarchicalPartition-method	ncol-HierarchicalPartition-method
nrow	nrow-dispatch
nrow,ConsensusPartition-method	nrow-ConsensusPartition-method
nrow,ConsensusPartitionList-method	nrow-ConsensusPartitionList-method
nrow,HierarchicalPartition-method	nrow-HierarchicalPartition-method
PAC	PAC
plot_ecdf	plot_ecdf-ConsensusPartition-method
plot_ecdf,ConsensusPartition-method	plot_ecdf-ConsensusPartition-method
predict_classes	predict_classes-dispatch
predict_classes,ConsensusPartition-method	predict_classes-ConsensusPartition-method
predict_classes,matrix-method	predict_classes-matrix-method
recalc_stats	recalc_stats
register_NMF	register_NMF
register_partition_methods	register_partition_methods
register_SOM	register_SOM
register_top_value_methods	register_top_value_methods
relabel_class	relabel_class
remove_partition_methods	remove_partition_methods
remove_top_value_methods	remove_top_value_methods
rownames	rownames-dispatch
rownames,ConsensusPartition-method	rownames-ConsensusPartition-method
rownames,ConsensusPartitionList-method	rownames-ConsensusPartitionList-method
rownames,HierarchicalPartition-method	rownames-HierarchicalPartition-method
run_all_consensus_partition_methods	run_all_consensus_partition_methods
select_partition_number	select_partition_number-ConsensusPartition-method
select_partition_number,ConsensusPartition-method	select_partition_number-ConsensusPartition-method
show	show-dispatch
show,ConsensusPartition-method	show-ConsensusPartition-method
show,ConsensusPartitionList-method	show-ConsensusPartitionList-method
show,DownSamplingConsensusPartition-method	show-DownSamplingConsensusPartition-method
show,HierarchicalPartition-method	show-HierarchicalPartition-method
suggest_best_k	suggest_best_k-dispatch
suggest_best_k,ConsensusPartition-method	suggest_best_k-ConsensusPartition-method
suggest_best_k,ConsensusPartitionList-method	suggest_best_k-ConsensusPartitionList-method
suggest_best_k,HierarchicalPartition-method	suggest_best_k-HierarchicalPartition-method
test_between_factors	test_between_factors
test_to_known_factors	test_to_known_factors-dispatch
test_to_known_factors,ConsensusPartition-method	test_to_known_factors-ConsensusPartition-method
test_to_known_factors,ConsensusPartitionList-method	test_to_known_factors-ConsensusPartitionList-method
test_to_known_factors,DownSamplingConsensusPartition-method	test_to_known_factors-DownSamplingConsensusPartition-method
test_to_known_factors,HierarchicalPartition-method	test_to_known_factors-HierarchicalPartition-method
top_elements_overlap	top_elements_overlap
top_rows_heatmap	top_rows_heatmap-dispatch
top_rows_heatmap,ConsensusPartitionList-method	top_rows_heatmap-ConsensusPartitionList-method
top_rows_heatmap,matrix-method	top_rows_heatmap-matrix-method
top_rows_overlap	top_rows_overlap-dispatch
top_rows_overlap,ConsensusPartitionList-method	top_rows_overlap-ConsensusPartitionList-method
top_rows_overlap,matrix-method	top_rows_overlap-matrix-method
[.ConsensusPartitionList	Extract.ConsensusPartitionList
[.HierarchicalPartition	Extract.HierarchicalPartition
[[.ConsensusPartitionList	ExtractExtract.ConsensusPartitionList
[[.HierarchicalPartition	ExtractExtract.HierarchicalPartition
