seqdat {clstutils} | R Documentation

## Annotation for the Enterococcus sequence data set.

### Description

Provides annotation for `link{seqs}`, an aligned 16S rRNA sequences representing three Enterococcus species.

### Usage

    data(seqdat)

### Format

A data frame with 200 observations on the following 5 variables.

`seqname`

  a character vector

`accession`

  a character vector containing GenBank accession numbers.

`tax_id`

  a character vector

`tax_name`

  a character vector

`isType`

  a logical vector indicating if the sequence is from a type strain.

### Source

These sequences were downloaded from the Ribosomal Database Project website http://rdp.cme.msu.edu/

### Examples

    data(seqdat)
    with(seqdat,{
    table(tax_name, isType)
    })

[Package clstutils version 1.38.0 Index]