getJasparMotifs {chromVAR} | R Documentation

## getJasparMotifs

### Description

Function to get motifs from JASPAR database

### Usage

    getJasparMotifs(species = "Homo sapiens", collection = "CORE", ...)

### Arguments

`species` | Which species? use eithe jaspar code or latin name. default is 'Homo sapiens'
`collection` | Which collection to use? default is 'CORE'
`...` | additional arguments to opts for `getMatrixSet`

### Details

Simply a wrapper function for `getMatrixSet` that calls JASPAR2016 database using `JASPAR2016`

### Value

`PFMatrixList`

### Examples

    motifs <- getJasparMotifs()

[Package chromVAR version 1.12.0 Index]